Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim60Q8VI40 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim60Q8VI40 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim60Q8VI40 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim60Q8VI40 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim60Q8VI40 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim60Q8VI40 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Trim60Q8VI40 Gm10418-201ENSMUST00000100943 576 ntBASIC18.26■□□□□ 0.51
Trim60Q8VI40 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim60Q8VI40 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC18.26■□□□□ 0.51
Trim60Q8VI40 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC18.26■□□□□ 0.51
Trim60Q8VI40 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim60Q8VI40 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Trim60Q8VI40 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC18.26■□□□□ 0.51
Trim60Q8VI40 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim60Q8VI40 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim60Q8VI40 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim60Q8VI40 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim60Q8VI40 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim60Q8VI40 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC18.26■□□□□ 0.51
Trim60Q8VI40 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim60Q8VI40 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trim60Q8VI40 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim60Q8VI40 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim60Q8VI40 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC18.25■□□□□ 0.51
Trim60Q8VI40 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Trim60Q8VI40 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Trim60Q8VI40 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC18.25■□□□□ 0.51
Trim60Q8VI40 Gm38285-201ENSMUST00000192928 922 ntBASIC18.25■□□□□ 0.51
Trim60Q8VI40 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Trim60Q8VI40 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim60Q8VI40 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim60Q8VI40 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim60Q8VI40 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC18.25■□□□□ 0.51
Trim60Q8VI40 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Trim60Q8VI40 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim60Q8VI40 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim60Q8VI40 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim60Q8VI40 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim60Q8VI40 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim60Q8VI40 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim60Q8VI40 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC18.25■□□□□ 0.51
Trim60Q8VI40 AC121598.2-201ENSMUST00000228376 2325 ntBASIC18.24■□□□□ 0.51
Trim60Q8VI40 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim60Q8VI40 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trim60Q8VI40 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim60Q8VI40 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim60Q8VI40 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim60Q8VI40 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trim60Q8VI40 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim60Q8VI40 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim60Q8VI40 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim60Q8VI40 Gm2399-201ENSMUST00000104944 225 ntBASIC18.23■□□□□ 0.51
Trim60Q8VI40 Gm8495-201ENSMUST00000188740 694 ntBASIC18.23■□□□□ 0.51
Trim60Q8VI40 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim60Q8VI40 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim60Q8VI40 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Trim60Q8VI40 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim60Q8VI40 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim60Q8VI40 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim60Q8VI40 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim60Q8VI40 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim60Q8VI40 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim60Q8VI40 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 14.3 ms