Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 AC130671.1-201ENSMUST00000227384 1237 ntBASIC20.53■□□□□ 0.88
Vps53Q8CCB4 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Vps53Q8CCB4 Gm9954-202ENSMUST00000198686 4725 ntBASIC20.52■□□□□ 0.88
Vps53Q8CCB4 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Vps53Q8CCB4 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Vps53Q8CCB4 Dmtn-207ENSMUST00000228001 2437 ntBASIC20.52■□□□□ 0.88
Vps53Q8CCB4 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Vps53Q8CCB4 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Vps53Q8CCB4 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Vps53Q8CCB4 Mir1199-201ENSMUST00000117015 119 ntBASIC20.52■□□□□ 0.88
Vps53Q8CCB4 Gm15565-201ENSMUST00000118890 427 ntBASIC20.52■□□□□ 0.88
Vps53Q8CCB4 Gm15847-201ENSMUST00000121417 1065 ntBASIC20.52■□□□□ 0.88
Vps53Q8CCB4 Gm13158-201ENSMUST00000122007 736 ntBASIC20.52■□□□□ 0.88
Vps53Q8CCB4 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC20.52■□□□□ 0.88
Vps53Q8CCB4 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Vps53Q8CCB4 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Vps53Q8CCB4 Gm45141-201ENSMUST00000206502 1888 ntBASIC20.52■□□□□ 0.87
Vps53Q8CCB4 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Vps53Q8CCB4 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC20.52■□□□□ 0.87
Vps53Q8CCB4 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps53Q8CCB4 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps53Q8CCB4 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps53Q8CCB4 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps53Q8CCB4 Tgds-204ENSMUST00000228543 1594 ntBASIC20.51■□□□□ 0.87
Vps53Q8CCB4 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps53Q8CCB4 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps53Q8CCB4 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps53Q8CCB4 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps53Q8CCB4 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps53Q8CCB4 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
Vps53Q8CCB4 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC20.51■□□□□ 0.87
Vps53Q8CCB4 Gm37055-201ENSMUST00000191866 133 ntBASIC20.51■□□□□ 0.87
Vps53Q8CCB4 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC20.51■□□□□ 0.87
Vps53Q8CCB4 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps53Q8CCB4 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps53Q8CCB4 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps53Q8CCB4 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Vps53Q8CCB4 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Vps53Q8CCB4 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Vps53Q8CCB4 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps53Q8CCB4 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps53Q8CCB4 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Vps53Q8CCB4 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Vps53Q8CCB4 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps53Q8CCB4 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps53Q8CCB4 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps53Q8CCB4 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Vps53Q8CCB4 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Vps53Q8CCB4 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Vps53Q8CCB4 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC20.5■□□□□ 0.87
Vps53Q8CCB4 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC20.5■□□□□ 0.87
Vps53Q8CCB4 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC20.5■□□□□ 0.87
Vps53Q8CCB4 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps53Q8CCB4 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps53Q8CCB4 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps53Q8CCB4 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Vps53Q8CCB4 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC20.5■□□□□ 0.87
Vps53Q8CCB4 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Vps53Q8CCB4 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Vps53Q8CCB4 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Vps53Q8CCB4 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Vps53Q8CCB4 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC20.49■□□□□ 0.87
Vps53Q8CCB4 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Vps53Q8CCB4 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC20.49■□□□□ 0.87
Vps53Q8CCB4 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Vps53Q8CCB4 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC20.49■□□□□ 0.87
Vps53Q8CCB4 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Vps53Q8CCB4 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Vps53Q8CCB4 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Vps53Q8CCB4 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Vps53Q8CCB4 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Vps53Q8CCB4 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
Vps53Q8CCB4 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Vps53Q8CCB4 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Vps53Q8CCB4 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Vps53Q8CCB4 Gm5828-201ENSMUST00000071842 1860 ntBASIC20.48■□□□□ 0.87
Vps53Q8CCB4 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC20.48■□□□□ 0.87
Vps53Q8CCB4 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Vps53Q8CCB4 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Vps53Q8CCB4 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms