Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Trim27Q62158 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
Trim27Q62158 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Trim27Q62158 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim27Q62158 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim27Q62158 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim27Q62158 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim27Q62158 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Trim27Q62158 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC21.7■■□□□ 1.06
Trim27Q62158 H2-K2-201ENSMUST00000174250 1049 ntBASIC21.7■■□□□ 1.06
Trim27Q62158 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Trim27Q62158 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim27Q62158 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim27Q62158 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim27Q62158 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim27Q62158 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim27Q62158 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim27Q62158 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim27Q62158 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
Trim27Q62158 Gm10698-201ENSMUST00000182663 604 ntBASIC21.69■■□□□ 1.06
Trim27Q62158 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim27Q62158 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim27Q62158 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Trim27Q62158 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Trim27Q62158 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Trim27Q62158 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim27Q62158 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trim27Q62158 Gm37519-201ENSMUST00000191687 2210 ntBASIC21.68■■□□□ 1.06
Trim27Q62158 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Trim27Q62158 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trim27Q62158 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trim27Q62158 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trim27Q62158 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim27Q62158 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim27Q62158 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim27Q62158 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim27Q62158 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC21.67■■□□□ 1.06
Trim27Q62158 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
Trim27Q62158 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC21.67■■□□□ 1.06
Trim27Q62158 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC21.67■■□□□ 1.06
Trim27Q62158 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim27Q62158 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC21.67■■□□□ 1.06
Trim27Q62158 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Trim27Q62158 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim27Q62158 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim27Q62158 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Trim27Q62158 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim27Q62158 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC21.67■■□□□ 1.06
Trim27Q62158 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Trim27Q62158 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim27Q62158 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
Trim27Q62158 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Trim27Q62158 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
Trim27Q62158 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Trim27Q62158 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim27Q62158 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim27Q62158 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Trim27Q62158 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim27Q62158 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Trim27Q62158 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Trim27Q62158 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim27Q62158 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim27Q62158 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC21.65■■□□□ 1.06
Trim27Q62158 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim27Q62158 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Trim27Q62158 Gm6598-201ENSMUST00000202719 2615 ntBASIC21.65■■□□□ 1.06
Trim27Q62158 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Trim27Q62158 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim27Q62158 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC21.65■■□□□ 1.06
Trim27Q62158 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Trim27Q62158 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim27Q62158 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC21.65■■□□□ 1.06
Trim27Q62158 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Trim27Q62158 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Trim27Q62158 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Trim27Q62158 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Trim27Q62158 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Trim27Q62158 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Trim27Q62158 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim27Q62158 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim27Q62158 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC21.64■■□□□ 1.05
Trim27Q62158 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
Trim27Q62158 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim27Q62158 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim27Q62158 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim27Q62158 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim27Q62158 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim27Q62158 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Trim27Q62158 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim27Q62158 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim27Q62158 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim27Q62158 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim27Q62158 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
Trim27Q62158 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim27Q62158 Gm43183-201ENSMUST00000200632 547 ntBASIC21.63■■□□□ 1.05
Trim27Q62158 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Trim27Q62158 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim27Q62158 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Trim27Q62158 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim27Q62158 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms