Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Six4Q61321 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Six4Q61321 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Six4Q61321 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC17.8■□□□□ 0.44
Six4Q61321 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC17.8■□□□□ 0.44
Six4Q61321 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Six4Q61321 AC175538.1-201ENSMUST00000225343 1269 ntBASIC17.8■□□□□ 0.44
Six4Q61321 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Six4Q61321 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC17.8■□□□□ 0.44
Six4Q61321 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Six4Q61321 Gm45606-201ENSMUST00000209836 2795 ntBASIC17.8■□□□□ 0.44
Six4Q61321 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
Six4Q61321 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Six4Q61321 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Six4Q61321 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Six4Q61321 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Six4Q61321 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Six4Q61321 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC17.79■□□□□ 0.44
Six4Q61321 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC17.79■□□□□ 0.44
Six4Q61321 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Six4Q61321 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Six4Q61321 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Six4Q61321 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Six4Q61321 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Six4Q61321 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Six4Q61321 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Six4Q61321 Mir1199-201ENSMUST00000117015 119 ntBASIC17.79■□□□□ 0.44
Six4Q61321 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Six4Q61321 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC17.79■□□□□ 0.44
Six4Q61321 AC154649.1-201ENSMUST00000227392 384 ntBASIC17.79■□□□□ 0.44
Six4Q61321 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Six4Q61321 AC124581.1-201ENSMUST00000225416 1399 ntBASIC17.79■□□□□ 0.44
Six4Q61321 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Six4Q61321 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Six4Q61321 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Six4Q61321 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC17.78■□□□□ 0.44
Six4Q61321 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Six4Q61321 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Six4Q61321 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Six4Q61321 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Six4Q61321 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC17.78■□□□□ 0.44
Six4Q61321 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC17.78■□□□□ 0.44
Six4Q61321 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Six4Q61321 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Six4Q61321 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Six4Q61321 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Six4Q61321 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Six4Q61321 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Six4Q61321 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Six4Q61321 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Six4Q61321 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Six4Q61321 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
Six4Q61321 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Six4Q61321 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC17.77■□□□□ 0.44
Six4Q61321 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Six4Q61321 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC17.77■□□□□ 0.44
Six4Q61321 Gm10517-202ENSMUST00000192970 758 ntBASIC17.77■□□□□ 0.44
Six4Q61321 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC17.77■□□□□ 0.44
Six4Q61321 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Six4Q61321 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC17.77■□□□□ 0.44
Six4Q61321 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Six4Q61321 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Six4Q61321 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Six4Q61321 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Six4Q61321 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC17.77■□□□□ 0.43
Six4Q61321 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
Six4Q61321 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC17.76■□□□□ 0.43
Six4Q61321 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Six4Q61321 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Six4Q61321 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Six4Q61321 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Six4Q61321 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Six4Q61321 Gm13181-201ENSMUST00000120117 1069 ntBASIC17.76■□□□□ 0.43
Six4Q61321 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC17.76■□□□□ 0.43
Six4Q61321 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC17.76■□□□□ 0.43
Six4Q61321 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Six4Q61321 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Six4Q61321 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Six4Q61321 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Six4Q61321 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Six4Q61321 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC17.76■□□□□ 0.43
Six4Q61321 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
Six4Q61321 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Six4Q61321 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Six4Q61321 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Six4Q61321 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Six4Q61321 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC17.75■□□□□ 0.43
Six4Q61321 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC17.75■□□□□ 0.43
Six4Q61321 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Six4Q61321 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Six4Q61321 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Six4Q61321 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Six4Q61321 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC17.74■□□□□ 0.43
Six4Q61321 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC17.74■□□□□ 0.43
Six4Q61321 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Six4Q61321 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
Six4Q61321 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Six4Q61321 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Six4Q61321 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Six4Q61321 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 44.1 ms