Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col27a1Q5QNQ9 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col27a1Q5QNQ9 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col27a1Q5QNQ9 Gm45906-201ENSMUST00000208911 1430 ntBASIC17.12■□□□□ 0.33
Col27a1Q5QNQ9 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
Col27a1Q5QNQ9 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col27a1Q5QNQ9 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Col27a1Q5QNQ9 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col27a1Q5QNQ9 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Col27a1Q5QNQ9 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC17.12■□□□□ 0.33
Col27a1Q5QNQ9 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Col27a1Q5QNQ9 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Col27a1Q5QNQ9 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col27a1Q5QNQ9 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col27a1Q5QNQ9 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col27a1Q5QNQ9 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
Col27a1Q5QNQ9 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col27a1Q5QNQ9 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col27a1Q5QNQ9 Gm11594-201ENSMUST00000122313 162 ntBASIC17.11■□□□□ 0.33
Col27a1Q5QNQ9 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col27a1Q5QNQ9 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col27a1Q5QNQ9 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col27a1Q5QNQ9 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col27a1Q5QNQ9 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col27a1Q5QNQ9 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Col27a1Q5QNQ9 Tgds-204ENSMUST00000228543 1594 ntBASIC17.11■□□□□ 0.33
Col27a1Q5QNQ9 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col27a1Q5QNQ9 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col27a1Q5QNQ9 Gm7935-201ENSMUST00000100555 1278 ntBASIC17.1■□□□□ 0.33
Col27a1Q5QNQ9 Gm12644-201ENSMUST00000119935 606 ntBASIC17.1■□□□□ 0.33
Col27a1Q5QNQ9 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC17.1■□□□□ 0.33
Col27a1Q5QNQ9 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col27a1Q5QNQ9 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Col27a1Q5QNQ9 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Col27a1Q5QNQ9 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col27a1Q5QNQ9 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC17.1■□□□□ 0.33
Col27a1Q5QNQ9 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
Col27a1Q5QNQ9 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col27a1Q5QNQ9 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
Col27a1Q5QNQ9 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col27a1Q5QNQ9 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col27a1Q5QNQ9 AC154855.1-201ENSMUST00000227353 1458 ntBASIC17.1■□□□□ 0.33
Col27a1Q5QNQ9 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Col27a1Q5QNQ9 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col27a1Q5QNQ9 Gm15372-201ENSMUST00000120729 834 ntBASIC17.1■□□□□ 0.33
Col27a1Q5QNQ9 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col27a1Q5QNQ9 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Col27a1Q5QNQ9 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col27a1Q5QNQ9 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col27a1Q5QNQ9 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col27a1Q5QNQ9 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Col27a1Q5QNQ9 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
Col27a1Q5QNQ9 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC17.09■□□□□ 0.33
Col27a1Q5QNQ9 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC17.09■□□□□ 0.33
Col27a1Q5QNQ9 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col27a1Q5QNQ9 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Col27a1Q5QNQ9 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC17.09■□□□□ 0.33
Col27a1Q5QNQ9 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col27a1Q5QNQ9 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col27a1Q5QNQ9 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col27a1Q5QNQ9 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col27a1Q5QNQ9 Gm6190-201ENSMUST00000220683 1374 ntBASIC17.08■□□□□ 0.33
Col27a1Q5QNQ9 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col27a1Q5QNQ9 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col27a1Q5QNQ9 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC17.08■□□□□ 0.33
Col27a1Q5QNQ9 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC17.08■□□□□ 0.33
Col27a1Q5QNQ9 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Col27a1Q5QNQ9 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col27a1Q5QNQ9 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col27a1Q5QNQ9 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col27a1Q5QNQ9 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Col27a1Q5QNQ9 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col27a1Q5QNQ9 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Gm44357-201ENSMUST00000195897 142 ntBASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Gm19658-201ENSMUST00000196231 138 ntBASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Gm44367-201ENSMUST00000196836 138 ntBASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Gm44350-201ENSMUST00000197197 138 ntBASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Gm44390-201ENSMUST00000197533 144 ntBASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Gm44313-201ENSMUST00000198018 138 ntBASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Gm44486-201ENSMUST00000198508 138 ntBASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Gm44454-201ENSMUST00000198541 138 ntBASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Gm44314-201ENSMUST00000199263 138 ntBASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Gm44394-201ENSMUST00000199558 138 ntBASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Gm44484-201ENSMUST00000199873 138 ntBASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Gm44466-201ENSMUST00000200264 138 ntBASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Gm44359-201ENSMUST00000200671 138 ntBASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Zkscan4-202ENSMUST00000225845 1506 ntBASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col27a1Q5QNQ9 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms