Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Limch1Q3UH68 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Limch1Q3UH68 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Limch1Q3UH68 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Limch1Q3UH68 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Limch1Q3UH68 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Limch1Q3UH68 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Limch1Q3UH68 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC20.74■□□□□ 0.91
Limch1Q3UH68 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Limch1Q3UH68 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Limch1Q3UH68 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC20.74■□□□□ 0.91
Limch1Q3UH68 Gm13836-201ENSMUST00000121159 501 ntBASIC20.74■□□□□ 0.91
Limch1Q3UH68 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC20.74■□□□□ 0.91
Limch1Q3UH68 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Limch1Q3UH68 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC20.74■□□□□ 0.91
Limch1Q3UH68 Gm8969-201ENSMUST00000199694 526 ntBASIC20.74■□□□□ 0.91
Limch1Q3UH68 AC153881.1-201ENSMUST00000214448 284 ntBASIC20.74■□□□□ 0.91
Limch1Q3UH68 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Limch1Q3UH68 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Limch1Q3UH68 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Limch1Q3UH68 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Limch1Q3UH68 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC20.74■□□□□ 0.91
Limch1Q3UH68 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Limch1Q3UH68 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Limch1Q3UH68 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Limch1Q3UH68 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Limch1Q3UH68 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
Limch1Q3UH68 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Limch1Q3UH68 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Limch1Q3UH68 Wnt10b-205ENSMUST00000226846 1204 ntBASIC20.73■□□□□ 0.91
Limch1Q3UH68 Zfp783-201ENSMUST00000095946 670 ntBASIC20.73■□□□□ 0.91
Limch1Q3UH68 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Limch1Q3UH68 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Limch1Q3UH68 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC20.73■□□□□ 0.91
Limch1Q3UH68 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Limch1Q3UH68 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Limch1Q3UH68 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Limch1Q3UH68 Gm42900-201ENSMUST00000197184 2167 ntBASIC20.72■□□□□ 0.91
Limch1Q3UH68 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Limch1Q3UH68 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Limch1Q3UH68 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Limch1Q3UH68 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Limch1Q3UH68 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC20.72■□□□□ 0.91
Limch1Q3UH68 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Limch1Q3UH68 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Limch1Q3UH68 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Limch1Q3UH68 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Limch1Q3UH68 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC20.71■□□□□ 0.91
Limch1Q3UH68 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Limch1Q3UH68 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Limch1Q3UH68 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
Limch1Q3UH68 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Limch1Q3UH68 Gm15847-201ENSMUST00000121417 1065 ntBASIC20.71■□□□□ 0.91
Limch1Q3UH68 Gm15378-201ENSMUST00000121894 207 ntBASIC20.71■□□□□ 0.91
Limch1Q3UH68 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
Limch1Q3UH68 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Limch1Q3UH68 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Limch1Q3UH68 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC20.71■□□□□ 0.91
Limch1Q3UH68 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Limch1Q3UH68 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Limch1Q3UH68 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Limch1Q3UH68 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Limch1Q3UH68 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC20.7■□□□□ 0.9
Limch1Q3UH68 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Limch1Q3UH68 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC20.7■□□□□ 0.9
Limch1Q3UH68 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Limch1Q3UH68 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Limch1Q3UH68 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Limch1Q3UH68 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC20.7■□□□□ 0.9
Limch1Q3UH68 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Limch1Q3UH68 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Limch1Q3UH68 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Limch1Q3UH68 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Limch1Q3UH68 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Limch1Q3UH68 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Limch1Q3UH68 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Limch1Q3UH68 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Limch1Q3UH68 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
Limch1Q3UH68 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Limch1Q3UH68 Flg-201ENSMUST00000050758 1488 ntBASIC20.69■□□□□ 0.9
Limch1Q3UH68 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Limch1Q3UH68 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Limch1Q3UH68 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Limch1Q3UH68 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Limch1Q3UH68 H2-K2-201ENSMUST00000174250 1049 ntBASIC20.69■□□□□ 0.9
Limch1Q3UH68 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC20.69■□□□□ 0.9
Limch1Q3UH68 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Limch1Q3UH68 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Limch1Q3UH68 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Limch1Q3UH68 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Limch1Q3UH68 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Limch1Q3UH68 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Limch1Q3UH68 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Limch1Q3UH68 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC20.69■□□□□ 0.9
Limch1Q3UH68 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
Limch1Q3UH68 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Limch1Q3UH68 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Limch1Q3UH68 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Limch1Q3UH68 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Limch1Q3UH68 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms