Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col6a1Q04857 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col6a1Q04857 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col6a1Q04857 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Col6a1Q04857 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col6a1Q04857 Gm9885-202ENSMUST00000186234 2209 ntBASIC19.45■□□□□ 0.7
Col6a1Q04857 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Col6a1Q04857 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col6a1Q04857 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Col6a1Q04857 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Col6a1Q04857 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Col6a1Q04857 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col6a1Q04857 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col6a1Q04857 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Col6a1Q04857 Gm7153-201ENSMUST00000117092 455 ntBASIC19.45■□□□□ 0.7
Col6a1Q04857 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col6a1Q04857 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC19.45■□□□□ 0.7
Col6a1Q04857 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Col6a1Q04857 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col6a1Q04857 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Col6a1Q04857 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Col6a1Q04857 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC19.44■□□□□ 0.7
Col6a1Q04857 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Col6a1Q04857 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
Col6a1Q04857 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col6a1Q04857 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col6a1Q04857 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col6a1Q04857 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col6a1Q04857 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col6a1Q04857 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col6a1Q04857 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Col6a1Q04857 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Col6a1Q04857 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col6a1Q04857 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col6a1Q04857 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Col6a1Q04857 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col6a1Q04857 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Col6a1Q04857 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Col6a1Q04857 Gm17807-201ENSMUST00000186869 298 ntBASIC19.43■□□□□ 0.7
Col6a1Q04857 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col6a1Q04857 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col6a1Q04857 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col6a1Q04857 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col6a1Q04857 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col6a1Q04857 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col6a1Q04857 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col6a1Q04857 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col6a1Q04857 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col6a1Q04857 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
Col6a1Q04857 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Col6a1Q04857 Umpk-ps-201ENSMUST00000211897 827 ntBASIC19.42■□□□□ 0.7
Col6a1Q04857 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col6a1Q04857 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col6a1Q04857 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col6a1Q04857 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Col6a1Q04857 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col6a1Q04857 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col6a1Q04857 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col6a1Q04857 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Col6a1Q04857 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col6a1Q04857 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
Col6a1Q04857 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col6a1Q04857 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col6a1Q04857 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col6a1Q04857 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col6a1Q04857 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col6a1Q04857 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC19.41■□□□□ 0.7
Col6a1Q04857 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col6a1Q04857 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col6a1Q04857 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Col6a1Q04857 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col6a1Q04857 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col6a1Q04857 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col6a1Q04857 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Col6a1Q04857 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col6a1Q04857 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col6a1Q04857 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC19.4■□□□□ 0.7
Col6a1Q04857 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC19.4■□□□□ 0.7
Col6a1Q04857 Gm5587-201ENSMUST00000206270 674 ntBASIC19.4■□□□□ 0.7
Col6a1Q04857 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Col6a1Q04857 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col6a1Q04857 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col6a1Q04857 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Col6a1Q04857 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col6a1Q04857 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col6a1Q04857 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC19.4■□□□□ 0.7
Col6a1Q04857 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col6a1Q04857 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col6a1Q04857 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col6a1Q04857 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
Col6a1Q04857 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Col6a1Q04857 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC19.39■□□□□ 0.7
Col6a1Q04857 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC19.39■□□□□ 0.7
Col6a1Q04857 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col6a1Q04857 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col6a1Q04857 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col6a1Q04857 Gm16061-201ENSMUST00000122167 857 ntBASIC19.39■□□□□ 0.69
Col6a1Q04857 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC19.39■□□□□ 0.69
Col6a1Q04857 Gm25925-201ENSMUST00000158314 306 ntBASIC19.39■□□□□ 0.69
Col6a1Q04857 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC19.39■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms