Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Msh3P13705 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msh3P13705 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msh3P13705 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Msh3P13705 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC19.43■□□□□ 0.7
Msh3P13705 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msh3P13705 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Msh3P13705 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msh3P13705 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msh3P13705 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Msh3P13705 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msh3P13705 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msh3P13705 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msh3P13705 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Msh3P13705 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msh3P13705 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Msh3P13705 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
Msh3P13705 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msh3P13705 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msh3P13705 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Msh3P13705 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msh3P13705 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Msh3P13705 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msh3P13705 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
Msh3P13705 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Msh3P13705 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msh3P13705 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msh3P13705 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Msh3P13705 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
Msh3P13705 Gm43183-201ENSMUST00000200632 547 ntBASIC19.41■□□□□ 0.7
Msh3P13705 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msh3P13705 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msh3P13705 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msh3P13705 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msh3P13705 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msh3P13705 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
Msh3P13705 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msh3P13705 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
Msh3P13705 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Msh3P13705 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC19.4■□□□□ 0.7
Msh3P13705 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Msh3P13705 Gm6598-201ENSMUST00000202719 2615 ntBASIC19.4■□□□□ 0.7
Msh3P13705 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msh3P13705 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Msh3P13705 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msh3P13705 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Msh3P13705 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Msh3P13705 Gm37519-201ENSMUST00000191687 2210 ntBASIC19.39■□□□□ 0.69
Msh3P13705 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Msh3P13705 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Msh3P13705 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Msh3P13705 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Msh3P13705 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Msh3P13705 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC19.39■□□□□ 0.69
Msh3P13705 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Msh3P13705 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
Msh3P13705 Gm15378-201ENSMUST00000121894 207 ntBASIC19.38■□□□□ 0.69
Msh3P13705 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Msh3P13705 Gm19721-201ENSMUST00000195284 1764 ntBASIC19.38■□□□□ 0.69
Msh3P13705 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Msh3P13705 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Msh3P13705 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Msh3P13705 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Msh3P13705 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Msh3P13705 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Msh3P13705 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msh3P13705 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC19.37■□□□□ 0.69
Msh3P13705 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msh3P13705 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msh3P13705 Gm12382-201ENSMUST00000122005 922 ntBASIC19.37■□□□□ 0.69
Msh3P13705 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Msh3P13705 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Msh3P13705 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC19.37■□□□□ 0.69
Msh3P13705 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Msh3P13705 Gm4974-201ENSMUST00000209974 875 ntBASIC19.37■□□□□ 0.69
Msh3P13705 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Msh3P13705 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC19.37■□□□□ 0.69
Msh3P13705 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msh3P13705 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msh3P13705 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msh3P13705 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msh3P13705 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msh3P13705 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msh3P13705 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh3P13705 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh3P13705 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC19.36■□□□□ 0.69
Msh3P13705 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh3P13705 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh3P13705 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC19.36■□□□□ 0.69
Msh3P13705 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Msh3P13705 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh3P13705 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh3P13705 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh3P13705 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC19.36■□□□□ 0.69
Msh3P13705 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh3P13705 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Msh3P13705 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
Msh3P13705 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh3P13705 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh3P13705 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms