Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Chmp6P0C0A3 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Chmp6P0C0A3 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Chmp6P0C0A3 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Chmp6P0C0A3 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Chmp6P0C0A3 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chmp6P0C0A3 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Chmp6P0C0A3 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Chmp6P0C0A3 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Chmp6P0C0A3 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Chmp6P0C0A3 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Chmp6P0C0A3 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Chmp6P0C0A3 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Chmp6P0C0A3 Gm9954-202ENSMUST00000198686 4725 ntBASIC19.18■□□□□ 0.66
Chmp6P0C0A3 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Chmp6P0C0A3 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Chmp6P0C0A3 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Chmp6P0C0A3 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Chmp6P0C0A3 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Chmp6P0C0A3 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Chmp6P0C0A3 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Chmp6P0C0A3 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Chmp6P0C0A3 Gm8520-201ENSMUST00000186517 868 ntBASIC19.17■□□□□ 0.66
Chmp6P0C0A3 Gm38285-201ENSMUST00000192928 922 ntBASIC19.17■□□□□ 0.66
Chmp6P0C0A3 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Chmp6P0C0A3 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Chmp6P0C0A3 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Chmp6P0C0A3 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
Chmp6P0C0A3 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Chmp6P0C0A3 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Chmp6P0C0A3 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Chmp6P0C0A3 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Chmp6P0C0A3 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Chmp6P0C0A3 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Chmp6P0C0A3 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Chmp6P0C0A3 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Chmp6P0C0A3 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Chmp6P0C0A3 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Chmp6P0C0A3 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Chmp6P0C0A3 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Chmp6P0C0A3 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Chmp6P0C0A3 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Chmp6P0C0A3 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Chmp6P0C0A3 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Chmp6P0C0A3 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Chmp6P0C0A3 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC19.15■□□□□ 0.66
Chmp6P0C0A3 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Chmp6P0C0A3 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Chmp6P0C0A3 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Chmp6P0C0A3 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Chmp6P0C0A3 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Chmp6P0C0A3 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Chmp6P0C0A3 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Chmp6P0C0A3 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Chmp6P0C0A3 Gm13158-201ENSMUST00000122007 736 ntBASIC19.15■□□□□ 0.66
Chmp6P0C0A3 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Chmp6P0C0A3 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Chmp6P0C0A3 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC19.15■□□□□ 0.66
Chmp6P0C0A3 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Chmp6P0C0A3 AC163280.1-201ENSMUST00000228194 1100 ntBASIC19.15■□□□□ 0.66
Chmp6P0C0A3 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Chmp6P0C0A3 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Chmp6P0C0A3 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC19.15■□□□□ 0.66
Chmp6P0C0A3 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Chmp6P0C0A3 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Chmp6P0C0A3 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Chmp6P0C0A3 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Chmp6P0C0A3 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
Chmp6P0C0A3 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Chmp6P0C0A3 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Chmp6P0C0A3 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Chmp6P0C0A3 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Chmp6P0C0A3 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Chmp6P0C0A3 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC19.14■□□□□ 0.65
Chmp6P0C0A3 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Chmp6P0C0A3 Gm22240-201ENSMUST00000175225 82 ntBASIC19.14■□□□□ 0.65
Chmp6P0C0A3 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Chmp6P0C0A3 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Chmp6P0C0A3 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Chmp6P0C0A3 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms