Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Hoxd3P09027 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Hoxd3P09027 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxd3P09027 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Hoxd3P09027 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxd3P09027 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxd3P09027 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxd3P09027 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxd3P09027 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
Hoxd3P09027 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC13.69□□□□□ -0.22
Hoxd3P09027 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxd3P09027 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC13.69□□□□□ -0.22
Hoxd3P09027 Gm9484-201ENSMUST00000195892 1159 ntBASIC13.69□□□□□ -0.22
Hoxd3P09027 Gm16042-201ENSMUST00000204813 1247 ntBASIC13.69□□□□□ -0.22
Hoxd3P09027 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxd3P09027 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxd3P09027 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxd3P09027 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxd3P09027 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Hoxd3P09027 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxd3P09027 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxd3P09027 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC13.69□□□□□ -0.22
Hoxd3P09027 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Hoxd3P09027 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
Hoxd3P09027 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxd3P09027 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxd3P09027 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Hoxd3P09027 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC13.68□□□□□ -0.22
Hoxd3P09027 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxd3P09027 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC13.68□□□□□ -0.22
Hoxd3P09027 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxd3P09027 Gm5417-201ENSMUST00000079706 384 ntBASIC13.68□□□□□ -0.22
Hoxd3P09027 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxd3P09027 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxd3P09027 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Hoxd3P09027 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
Hoxd3P09027 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxd3P09027 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxd3P09027 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxd3P09027 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxd3P09027 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxd3P09027 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxd3P09027 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxd3P09027 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxd3P09027 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxd3P09027 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxd3P09027 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxd3P09027 Gm11643-201ENSMUST00000119578 864 ntBASIC13.67□□□□□ -0.22
Hoxd3P09027 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
Hoxd3P09027 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
Hoxd3P09027 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Hoxd3P09027 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxd3P09027 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Hoxd3P09027 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC13.67□□□□□ -0.22
Hoxd3P09027 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC13.67□□□□□ -0.22
Hoxd3P09027 AC156016.1-201ENSMUST00000227190 1035 ntBASIC13.67□□□□□ -0.22
Hoxd3P09027 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxd3P09027 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Hoxd3P09027 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
Hoxd3P09027 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxd3P09027 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxd3P09027 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxd3P09027 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxd3P09027 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxd3P09027 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxd3P09027 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxd3P09027 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxd3P09027 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Hoxd3P09027 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxd3P09027 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxd3P09027 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxd3P09027 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxd3P09027 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxd3P09027 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxd3P09027 Gm7712-202ENSMUST00000222331 1510 ntBASIC13.66□□□□□ -0.22
Hoxd3P09027 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxd3P09027 Gm15565-201ENSMUST00000118890 427 ntBASIC13.66□□□□□ -0.22
Hoxd3P09027 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxd3P09027 Krtap5-1-202ENSMUST00000188274 742 ntBASIC13.66□□□□□ -0.22
Hoxd3P09027 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxd3P09027 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxd3P09027 Arhgef4-208ENSMUST00000211073 171 ntBASIC13.66□□□□□ -0.22
Hoxd3P09027 Timm23-208ENSMUST00000226683 750 ntBASIC13.66□□□□□ -0.22
Hoxd3P09027 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxd3P09027 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxd3P09027 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Hoxd3P09027 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC13.66□□□□□ -0.22
Hoxd3P09027 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxd3P09027 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxd3P09027 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Hoxd3P09027 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC13.66□□□□□ -0.22
Hoxd3P09027 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC13.66□□□□□ -0.22
Hoxd3P09027 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxd3P09027 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxd3P09027 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hoxd3P09027 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
Hoxd3P09027 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hoxd3P09027 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hoxd3P09027 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hoxd3P09027 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms