Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vti1aO89116 Gm43182-201ENSMUST00000199476 2528 ntBASIC19.04■□□□□ 0.64
Vti1aO89116 Grk6-206ENSMUST00000224995 2971 ntBASIC19.04■□□□□ 0.64
Vti1aO89116 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vti1aO89116 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Vti1aO89116 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
Vti1aO89116 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vti1aO89116 Gm37292-201ENSMUST00000192062 758 ntBASIC19.04■□□□□ 0.64
Vti1aO89116 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC19.04■□□□□ 0.64
Vti1aO89116 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Vti1aO89116 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Vti1aO89116 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC19.04■□□□□ 0.64
Vti1aO89116 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vti1aO89116 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Vti1aO89116 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Vti1aO89116 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Vti1aO89116 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Vti1aO89116 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Vti1aO89116 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Vti1aO89116 Shroom3-211ENSMUST00000225438 5742 ntBASIC19.03■□□□□ 0.64
Vti1aO89116 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC19.03■□□□□ 0.64
Vti1aO89116 Gm10231-201ENSMUST00000181584 441 ntBASIC19.03■□□□□ 0.64
Vti1aO89116 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Vti1aO89116 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Vti1aO89116 Gm10175-202ENSMUST00000208752 441 ntBASIC19.03■□□□□ 0.64
Vti1aO89116 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Vti1aO89116 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Vti1aO89116 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Vti1aO89116 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
Vti1aO89116 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC19.03■□□□□ 0.64
Vti1aO89116 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
Vti1aO89116 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Vti1aO89116 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Vti1aO89116 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC19.02■□□□□ 0.64
Vti1aO89116 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Vti1aO89116 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Vti1aO89116 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC19.02■□□□□ 0.64
Vti1aO89116 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Vti1aO89116 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.64
Vti1aO89116 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
Vti1aO89116 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Vti1aO89116 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Vti1aO89116 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Vti1aO89116 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Vti1aO89116 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Vti1aO89116 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Vti1aO89116 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC19.02■□□□□ 0.63
Vti1aO89116 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Vti1aO89116 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Vti1aO89116 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
Vti1aO89116 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC19.01■□□□□ 0.63
Vti1aO89116 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Vti1aO89116 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC19.01■□□□□ 0.63
Vti1aO89116 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Vti1aO89116 Gm7712-202ENSMUST00000222331 1510 ntBASIC19.01■□□□□ 0.63
Vti1aO89116 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Vti1aO89116 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Vti1aO89116 Gm5953-201ENSMUST00000220644 2616 ntBASIC19.01■□□□□ 0.63
Vti1aO89116 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Vti1aO89116 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Vti1aO89116 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Vti1aO89116 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Vti1aO89116 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC19.01■□□□□ 0.63
Vti1aO89116 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC19.01■□□□□ 0.63
Vti1aO89116 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
Vti1aO89116 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC19.01■□□□□ 0.63
Vti1aO89116 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Vti1aO89116 AC121961.1-201ENSMUST00000218594 1779 ntBASIC19.01■□□□□ 0.63
Vti1aO89116 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Vti1aO89116 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC19■□□□□ 0.63
Vti1aO89116 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC19■□□□□ 0.63
Vti1aO89116 Gm21814-202ENSMUST00000203277 873 ntBASIC19■□□□□ 0.63
Vti1aO89116 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC19■□□□□ 0.63
Vti1aO89116 Timm23-208ENSMUST00000226683 750 ntBASIC19■□□□□ 0.63
Vti1aO89116 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Vti1aO89116 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Vti1aO89116 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC19■□□□□ 0.63
Vti1aO89116 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC19■□□□□ 0.63
Vti1aO89116 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Vti1aO89116 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Vti1aO89116 Fam105a-203ENSMUST00000226170 3043 ntBASIC19■□□□□ 0.63
Vti1aO89116 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC19■□□□□ 0.63
Vti1aO89116 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Vti1aO89116 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Vti1aO89116 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC19■□□□□ 0.63
Vti1aO89116 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Vti1aO89116 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Vti1aO89116 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Vti1aO89116 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Vti1aO89116 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Vti1aO89116 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC18.99■□□□□ 0.63
Vti1aO89116 Mir6349-201ENSMUST00000184059 97 ntBASIC18.99■□□□□ 0.63
Vti1aO89116 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Vti1aO89116 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Vti1aO89116 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Vti1aO89116 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Vti1aO89116 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Vti1aO89116 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Vti1aO89116 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Vti1aO89116 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC18.99■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms