Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Upf1Q9EPU0 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Upf1Q9EPU0 AC154527.4-201ENSMUST00000224364 1667 ntBASIC20.22■□□□□ 0.83
Upf1Q9EPU0 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Upf1Q9EPU0 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Upf1Q9EPU0 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Upf1Q9EPU0 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Upf1Q9EPU0 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Upf1Q9EPU0 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Upf1Q9EPU0 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC20.21■□□□□ 0.83
Upf1Q9EPU0 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
Upf1Q9EPU0 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Upf1Q9EPU0 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC20.21■□□□□ 0.83
Upf1Q9EPU0 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Upf1Q9EPU0 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Upf1Q9EPU0 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Upf1Q9EPU0 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Upf1Q9EPU0 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Upf1Q9EPU0 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Upf1Q9EPU0 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Upf1Q9EPU0 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Upf1Q9EPU0 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC20.2■□□□□ 0.82
Upf1Q9EPU0 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Upf1Q9EPU0 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Upf1Q9EPU0 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Upf1Q9EPU0 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Upf1Q9EPU0 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
Upf1Q9EPU0 AC126028.2-201ENSMUST00000228100 1833 ntBASIC20.2■□□□□ 0.82
Upf1Q9EPU0 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Upf1Q9EPU0 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Upf1Q9EPU0 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Upf1Q9EPU0 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Upf1Q9EPU0 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf1Q9EPU0 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf1Q9EPU0 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Upf1Q9EPU0 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf1Q9EPU0 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf1Q9EPU0 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf1Q9EPU0 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC20.19■□□□□ 0.82
Upf1Q9EPU0 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf1Q9EPU0 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Upf1Q9EPU0 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf1Q9EPU0 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf1Q9EPU0 Gm13127-201ENSMUST00000118978 1389 ntBASIC20.19■□□□□ 0.82
Upf1Q9EPU0 Gm18856-201ENSMUST00000178096 1374 ntBASIC20.19■□□□□ 0.82
Upf1Q9EPU0 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf1Q9EPU0 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Upf1Q9EPU0 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Upf1Q9EPU0 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Upf1Q9EPU0 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Upf1Q9EPU0 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC20.18■□□□□ 0.82
Upf1Q9EPU0 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC20.18■□□□□ 0.82
Upf1Q9EPU0 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC20.18■□□□□ 0.82
Upf1Q9EPU0 AC160338.1-201ENSMUST00000214232 705 ntBASIC20.18■□□□□ 0.82
Upf1Q9EPU0 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC20.18■□□□□ 0.82
Upf1Q9EPU0 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Upf1Q9EPU0 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Upf1Q9EPU0 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Upf1Q9EPU0 Snhg20-203ENSMUST00000182811 2153 ntBASIC20.18■□□□□ 0.82
Upf1Q9EPU0 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Upf1Q9EPU0 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Upf1Q9EPU0 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Gm44357-201ENSMUST00000195897 142 ntBASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Gm19658-201ENSMUST00000196231 138 ntBASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Gm44367-201ENSMUST00000196836 138 ntBASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Gm44350-201ENSMUST00000197197 138 ntBASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Gm44390-201ENSMUST00000197533 144 ntBASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Gm44313-201ENSMUST00000198018 138 ntBASIC20.17■□□□□ 0.82
Upf1Q9EPU0 AC151286.1-201ENSMUST00000198489 145 ntBASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Gm44486-201ENSMUST00000198508 138 ntBASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Gm44454-201ENSMUST00000198541 138 ntBASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Gm44314-201ENSMUST00000199263 138 ntBASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Gm44394-201ENSMUST00000199558 138 ntBASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Gm44484-201ENSMUST00000199873 138 ntBASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Gm44466-201ENSMUST00000200264 138 ntBASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Gm44359-201ENSMUST00000200671 138 ntBASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Upf1Q9EPU0 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Upf1Q9EPU0 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC20.17■□□□□ 0.82
Upf1Q9EPU0 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Upf1Q9EPU0 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Upf1Q9EPU0 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Upf1Q9EPU0 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Upf1Q9EPU0 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Upf1Q9EPU0 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC20.16■□□□□ 0.82
Upf1Q9EPU0 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Upf1Q9EPU0 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Upf1Q9EPU0 Gm32996-201ENSMUST00000199828 1447 ntBASIC20.16■□□□□ 0.82
Upf1Q9EPU0 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Upf1Q9EPU0 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms