Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps39Q8R5L3 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps39Q8R5L3 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps39Q8R5L3 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps39Q8R5L3 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
Vps39Q8R5L3 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps39Q8R5L3 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC17.73■□□□□ 0.43
Vps39Q8R5L3 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC17.73■□□□□ 0.43
Vps39Q8R5L3 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps39Q8R5L3 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps39Q8R5L3 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps39Q8R5L3 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC17.73■□□□□ 0.43
Vps39Q8R5L3 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC17.73■□□□□ 0.43
Vps39Q8R5L3 Mir5133-201ENSMUST00000174955 77 ntBASIC17.73■□□□□ 0.43
Vps39Q8R5L3 Gm38285-201ENSMUST00000192928 922 ntBASIC17.73■□□□□ 0.43
Vps39Q8R5L3 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC17.73■□□□□ 0.43
Vps39Q8R5L3 Gm44549-201ENSMUST00000208351 577 ntBASIC17.73■□□□□ 0.43
Vps39Q8R5L3 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps39Q8R5L3 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps39Q8R5L3 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps39Q8R5L3 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps39Q8R5L3 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC17.73■□□□□ 0.43
Vps39Q8R5L3 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps39Q8R5L3 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Vps39Q8R5L3 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC17.72■□□□□ 0.43
Vps39Q8R5L3 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps39Q8R5L3 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps39Q8R5L3 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps39Q8R5L3 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Vps39Q8R5L3 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC17.72■□□□□ 0.43
Vps39Q8R5L3 Idnk-204ENSMUST00000226010 1898 ntBASIC17.72■□□□□ 0.43
Vps39Q8R5L3 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC17.72■□□□□ 0.43
Vps39Q8R5L3 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Vps39Q8R5L3 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Vps39Q8R5L3 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Vps39Q8R5L3 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps39Q8R5L3 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps39Q8R5L3 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps39Q8R5L3 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps39Q8R5L3 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Vps39Q8R5L3 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps39Q8R5L3 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Vps39Q8R5L3 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Vps39Q8R5L3 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps39Q8R5L3 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Vps39Q8R5L3 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Vps39Q8R5L3 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps39Q8R5L3 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps39Q8R5L3 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps39Q8R5L3 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC17.71■□□□□ 0.43
Vps39Q8R5L3 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC17.71■□□□□ 0.43
Vps39Q8R5L3 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
Vps39Q8R5L3 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Vps39Q8R5L3 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Vps39Q8R5L3 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps39Q8R5L3 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps39Q8R5L3 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Vps39Q8R5L3 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Vps39Q8R5L3 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Vps39Q8R5L3 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps39Q8R5L3 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Vps39Q8R5L3 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps39Q8R5L3 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps39Q8R5L3 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps39Q8R5L3 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps39Q8R5L3 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps39Q8R5L3 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Vps39Q8R5L3 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC17.7■□□□□ 0.42
Vps39Q8R5L3 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps39Q8R5L3 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps39Q8R5L3 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Vps39Q8R5L3 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Vps39Q8R5L3 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC17.7■□□□□ 0.42
Vps39Q8R5L3 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC17.7■□□□□ 0.42
Vps39Q8R5L3 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC17.7■□□□□ 0.42
Vps39Q8R5L3 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Flg-201ENSMUST00000050758 1488 ntBASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Gm37194-201ENSMUST00000193092 3031 ntBASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps39Q8R5L3 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms