Protein–RNA interactions for Protein: Q7M729

Scn4b, Sodium channel subunit beta-4, mousemouse

Predictions only

Length 228 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4bQ7M729 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
Scn4bQ7M729 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4bQ7M729 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4bQ7M729 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC17.24■□□□□ 0.35
Scn4bQ7M729 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4bQ7M729 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4bQ7M729 Gm43702-201ENSMUST00000198772 2546 ntBASIC17.24■□□□□ 0.35
Scn4bQ7M729 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4bQ7M729 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC17.24■□□□□ 0.35
Scn4bQ7M729 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4bQ7M729 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Scn4bQ7M729 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC17.24■□□□□ 0.35
Scn4bQ7M729 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4bQ7M729 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4bQ7M729 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4bQ7M729 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4bQ7M729 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4bQ7M729 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC17.23■□□□□ 0.35
Scn4bQ7M729 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4bQ7M729 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC17.23■□□□□ 0.35
Scn4bQ7M729 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4bQ7M729 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Scn4bQ7M729 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4bQ7M729 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4bQ7M729 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4bQ7M729 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4bQ7M729 AC108858.1-201ENSMUST00000228461 1498 ntBASIC17.23■□□□□ 0.35
Scn4bQ7M729 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4bQ7M729 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4bQ7M729 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4bQ7M729 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4bQ7M729 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4bQ7M729 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4bQ7M729 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC17.22■□□□□ 0.35
Scn4bQ7M729 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4bQ7M729 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4bQ7M729 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4bQ7M729 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Scn4bQ7M729 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4bQ7M729 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4bQ7M729 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4bQ7M729 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4bQ7M729 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4bQ7M729 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4bQ7M729 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4bQ7M729 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4bQ7M729 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC17.22■□□□□ 0.35
Scn4bQ7M729 Gm12896-201ENSMUST00000118430 226 ntBASIC17.22■□□□□ 0.35
Scn4bQ7M729 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC17.22■□□□□ 0.35
Scn4bQ7M729 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC17.22■□□□□ 0.35
Scn4bQ7M729 CT025689.6-201ENSMUST00000224991 1104 ntBASIC17.22■□□□□ 0.35
Scn4bQ7M729 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4bQ7M729 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4bQ7M729 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4bQ7M729 Dio3-201ENSMUST00000097228 1449 ntBASIC17.21■□□□□ 0.35
Scn4bQ7M729 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4bQ7M729 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4bQ7M729 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4bQ7M729 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4bQ7M729 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4bQ7M729 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4bQ7M729 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4bQ7M729 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4bQ7M729 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Scn4bQ7M729 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4bQ7M729 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4bQ7M729 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC17.21■□□□□ 0.35
Scn4bQ7M729 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4bQ7M729 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4bQ7M729 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4bQ7M729 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4bQ7M729 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4bQ7M729 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4bQ7M729 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Scn4bQ7M729 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn4bQ7M729 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn4bQ7M729 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn4bQ7M729 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC17.2■□□□□ 0.34
Scn4bQ7M729 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Scn4bQ7M729 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn4bQ7M729 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn4bQ7M729 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC17.2■□□□□ 0.34
Scn4bQ7M729 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn4bQ7M729 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Scn4bQ7M729 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC17.2■□□□□ 0.34
Scn4bQ7M729 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC17.2■□□□□ 0.34
Scn4bQ7M729 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC17.2■□□□□ 0.34
Scn4bQ7M729 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn4bQ7M729 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Scn4bQ7M729 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4bQ7M729 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4bQ7M729 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4bQ7M729 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC17.19■□□□□ 0.34
Scn4bQ7M729 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4bQ7M729 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4bQ7M729 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4bQ7M729 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4bQ7M729 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC17.19■□□□□ 0.34
Scn4bQ7M729 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4bQ7M729 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms