Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Col1a1P11087 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col1a1P11087 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
Col1a1P11087 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
Col1a1P11087 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Col1a1P11087 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col1a1P11087 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC20.76■□□□□ 0.91
Col1a1P11087 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Col1a1P11087 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col1a1P11087 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col1a1P11087 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col1a1P11087 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col1a1P11087 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col1a1P11087 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col1a1P11087 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC20.75■□□□□ 0.91
Col1a1P11087 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col1a1P11087 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col1a1P11087 Gm27742-201ENSMUST00000184667 60 ntBASIC20.75■□□□□ 0.91
Col1a1P11087 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC20.75■□□□□ 0.91
Col1a1P11087 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC20.75■□□□□ 0.91
Col1a1P11087 Gm18115-201ENSMUST00000221209 621 ntBASIC20.75■□□□□ 0.91
Col1a1P11087 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col1a1P11087 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col1a1P11087 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col1a1P11087 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col1a1P11087 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col1a1P11087 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Col1a1P11087 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC20.75■□□□□ 0.91
Col1a1P11087 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Col1a1P11087 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC20.75■□□□□ 0.91
Col1a1P11087 Gm3272-201ENSMUST00000181181 1229 ntBASIC20.75■□□□□ 0.91
Col1a1P11087 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col1a1P11087 Gm10566-201ENSMUST00000086739 996 ntBASIC20.75■□□□□ 0.91
Col1a1P11087 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col1a1P11087 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC20.74■□□□□ 0.91
Col1a1P11087 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col1a1P11087 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col1a1P11087 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col1a1P11087 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Col1a1P11087 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col1a1P11087 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
Col1a1P11087 Gm24589-201ENSMUST00000116692 94 ntBASIC20.74■□□□□ 0.91
Col1a1P11087 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Col1a1P11087 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col1a1P11087 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Col1a1P11087 Spr-ps1-201ENSMUST00000089584 605 ntBASIC20.74■□□□□ 0.91
Col1a1P11087 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col1a1P11087 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col1a1P11087 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col1a1P11087 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col1a1P11087 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col1a1P11087 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col1a1P11087 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col1a1P11087 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC20.73■□□□□ 0.91
Col1a1P11087 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col1a1P11087 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col1a1P11087 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC20.73■□□□□ 0.91
Col1a1P11087 Gm37722-201ENSMUST00000193757 208 ntBASIC20.73■□□□□ 0.91
Col1a1P11087 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col1a1P11087 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC20.73■□□□□ 0.91
Col1a1P11087 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col1a1P11087 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col1a1P11087 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col1a1P11087 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Col1a1P11087 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col1a1P11087 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col1a1P11087 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
Col1a1P11087 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC20.72■□□□□ 0.91
Col1a1P11087 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Col1a1P11087 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col1a1P11087 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col1a1P11087 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col1a1P11087 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col1a1P11087 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Col1a1P11087 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Col1a1P11087 Actl10-202ENSMUST00000226583 1501 ntBASIC20.71■□□□□ 0.91
Col1a1P11087 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col1a1P11087 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC20.71■□□□□ 0.91
Col1a1P11087 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC20.71■□□□□ 0.91
Col1a1P11087 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col1a1P11087 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col1a1P11087 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col1a1P11087 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Col1a1P11087 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Col1a1P11087 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col1a1P11087 Mir770-201ENSMUST00000103252 94 ntBASIC20.7■□□□□ 0.9
Col1a1P11087 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Col1a1P11087 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC20.7■□□□□ 0.9
Col1a1P11087 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Col1a1P11087 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col1a1P11087 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col1a1P11087 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col1a1P11087 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col1a1P11087 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col1a1P11087 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col1a1P11087 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Col1a1P11087 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col1a1P11087 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col1a1P11087 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col1a1P11087 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms