Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Gm10602-201ENSMUST00000098239 609 ntBASIC16.85■□□□□ 0.29
Clk3O35492 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Clk3O35492 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Clk3O35492 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Clk3O35492 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Clk3O35492 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Clk3O35492 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
Clk3O35492 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC16.85■□□□□ 0.29
Clk3O35492 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Clk3O35492 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Clk3O35492 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Clk3O35492 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Clk3O35492 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Clk3O35492 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clk3O35492 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Clk3O35492 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clk3O35492 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clk3O35492 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clk3O35492 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clk3O35492 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clk3O35492 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC16.84■□□□□ 0.29
Clk3O35492 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Clk3O35492 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clk3O35492 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clk3O35492 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC16.84■□□□□ 0.29
Clk3O35492 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clk3O35492 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clk3O35492 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clk3O35492 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Clk3O35492 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.29
Clk3O35492 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
Clk3O35492 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clk3O35492 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clk3O35492 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
Clk3O35492 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clk3O35492 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clk3O35492 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clk3O35492 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC16.83■□□□□ 0.28
Clk3O35492 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clk3O35492 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clk3O35492 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clk3O35492 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clk3O35492 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clk3O35492 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Clk3O35492 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clk3O35492 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Clk3O35492 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clk3O35492 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Clk3O35492 Gm9194-201ENSMUST00000220749 1447 ntBASIC16.82■□□□□ 0.28
Clk3O35492 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clk3O35492 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clk3O35492 Gm6211-202ENSMUST00000167849 925 ntBASIC16.82■□□□□ 0.28
Clk3O35492 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clk3O35492 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Clk3O35492 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clk3O35492 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clk3O35492 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clk3O35492 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clk3O35492 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clk3O35492 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Clk3O35492 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
Clk3O35492 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clk3O35492 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clk3O35492 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clk3O35492 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clk3O35492 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clk3O35492 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
Clk3O35492 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Clk3O35492 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC16.81■□□□□ 0.28
Clk3O35492 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
Clk3O35492 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC16.81■□□□□ 0.28
Clk3O35492 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clk3O35492 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clk3O35492 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clk3O35492 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Clk3O35492 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clk3O35492 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Clk3O35492 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Clk3O35492 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clk3O35492 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clk3O35492 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Clk3O35492 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk3O35492 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Clk3O35492 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk3O35492 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk3O35492 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk3O35492 Gm13509-201ENSMUST00000119733 1308 ntBASIC16.8■□□□□ 0.28
Clk3O35492 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk3O35492 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk3O35492 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk3O35492 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Clk3O35492 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC16.8■□□□□ 0.28
Clk3O35492 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Clk3O35492 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk3O35492 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Clk3O35492 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk3O35492 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk3O35492 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk3O35492 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Clk3O35492 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms