Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdhgb8A0A140LI48 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdhgb8A0A140LI48 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdhgb8A0A140LI48 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdhgb8A0A140LI48 Gm32699-201ENSMUST00000221728 1988 ntBASIC15.99■□□□□ 0.15
Pcdhgb8A0A140LI48 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdhgb8A0A140LI48 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdhgb8A0A140LI48 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdhgb8A0A140LI48 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdhgb8A0A140LI48 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdhgb8A0A140LI48 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC15.99■□□□□ 0.15
Pcdhgb8A0A140LI48 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdhgb8A0A140LI48 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdhgb8A0A140LI48 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Pcdhgb8A0A140LI48 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdhgb8A0A140LI48 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdhgb8A0A140LI48 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdhgb8A0A140LI48 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Pcdhgb8A0A140LI48 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdhgb8A0A140LI48 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Gm12441-201ENSMUST00000121806 588 ntBASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdhgb8A0A140LI48 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 Nespas-201ENSMUST00000143738 1083 ntBASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 Gm4968-201ENSMUST00000071458 858 ntBASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdhgb8A0A140LI48 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Pcdhgb8A0A140LI48 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
Pcdhgb8A0A140LI48 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC15.96■□□□□ 0.15
Pcdhgb8A0A140LI48 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Pcdhgb8A0A140LI48 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC15.96■□□□□ 0.15
Pcdhgb8A0A140LI48 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
Pcdhgb8A0A140LI48 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Pcdhgb8A0A140LI48 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Pcdhgb8A0A140LI48 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Pcdhgb8A0A140LI48 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Pcdhgb8A0A140LI48 Gm12669-201ENSMUST00000122162 1009 ntBASIC15.96■□□□□ 0.15
Pcdhgb8A0A140LI48 Gm6211-202ENSMUST00000167849 925 ntBASIC15.96■□□□□ 0.15
Pcdhgb8A0A140LI48 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC15.96■□□□□ 0.15
Pcdhgb8A0A140LI48 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Pcdhgb8A0A140LI48 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Pcdhgb8A0A140LI48 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Pcdhgb8A0A140LI48 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Pcdhgb8A0A140LI48 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Pcdhgb8A0A140LI48 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Pcdhgb8A0A140LI48 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Pcdhgb8A0A140LI48 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Pcdhgb8A0A140LI48 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Pcdhgb8A0A140LI48 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Pcdhgb8A0A140LI48 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Pcdhgb8A0A140LI48 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Pcdhgb8A0A140LI48 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
Pcdhgb8A0A140LI48 Gm43672-201ENSMUST00000199072 1731 ntBASIC15.95■□□□□ 0.14
Pcdhgb8A0A140LI48 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Pcdhgb8A0A140LI48 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Pcdhgb8A0A140LI48 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Pcdhgb8A0A140LI48 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Pcdhgb8A0A140LI48 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Pcdhgb8A0A140LI48 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Pcdhgb8A0A140LI48 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 56.5 ms