Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Vmn2r89-202ENSMUST00000159734 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Vmn1r171-210ENSMUST00000228484 2421 ntAPPRIS ALT2 BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Vmn2r99-201ENSMUST00000176107 2571 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Vmn1r87-203ENSMUST00000227443 5319 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
Nkx3-1P97436 4933439N06Rik-201ENSMUST00000203062 1365 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm44220-201ENSMUST00000203784 2487 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 Vmn1r204-202ENSMUST00000228195 2936 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Spata1-206ENSMUST00000197980 1807 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Far2-202ENSMUST00000111607 3395 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Far1-202ENSMUST00000067929 4935 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Trav2-201ENSMUST00000103568 325 ntAPPRIS ALT2 BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm25096-201ENSMUST00000104043 129 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm15791-201ENSMUST00000120365 319 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm12854-201ENSMUST00000128518 297 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm23115-201ENSMUST00000158480 108 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm3531-201ENSMUST00000162698 489 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 Pkib-209ENSMUST00000177325 540 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
Nkx3-1P97436 C130060C02Rik-201ENSMUST00000181731 1142 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm27492-201ENSMUST00000185194 187 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm29540-201ENSMUST00000188207 337 ntTSL 3 BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm28468-201ENSMUST00000188536 615 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm9687-201ENSMUST00000189312 602 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 Ly6e-215ENSMUST00000191436 1122 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm9134-201ENSMUST00000193186 551 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 1700013M08Rik-201ENSMUST00000197709 683 ntTSL 3 BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm4321-201ENSMUST00000200520 442 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm35216-201ENSMUST00000203777 433 ntTSL 2 BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm34224-201ENSMUST00000204606 364 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 Olfr494-201ENSMUST00000209743 1002 ntAPPRIS P1 TSL 3 BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Olfr494-202ENSMUST00000210291 947 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm5373-201ENSMUST00000212113 1050 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 Rpl18a-205ENSMUST00000212494 473 ntTSL 5 BASIC4.45□□□□□ -1.7
Nkx3-1P97436 AC153955.3-201ENSMUST00000216787 646 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm9512-201ENSMUST00000223112 497 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 AC131745.1-201ENSMUST00000223660 330 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 Ap3m1-208ENSMUST00000224016 764 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 CT025525.4-201ENSMUST00000227728 277 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 AC125539.2-202ENSMUST00000227983 587 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 AC125539.2-201ENSMUST00000228339 753 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 AC154239.1-201ENSMUST00000228565 406 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 Tsga13-201ENSMUST00000048580 1141 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm7665-201ENSMUST00000076710 297 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 Mir27a-201ENSMUST00000083510 87 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm12633-201ENSMUST00000117742 1705 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 Vmn2r88-202ENSMUST00000159674 3098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Tubal3-201ENSMUST00000021639 3096 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
Nkx3-1P97436 F13a1-201ENSMUST00000037491 3952 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm37356-201ENSMUST00000193362 1613 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 Ktn1-208ENSMUST00000187039 3875 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm14988-201ENSMUST00000117224 1548 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm44248-201ENSMUST00000203079 1549 ntBASIC4.45□□□□□ -1.7
Nkx3-1P97436 AC155941.5-201ENSMUST00000218925 1505 ntTSL 5 BASIC4.45□□□□□ -1.7
Nkx3-1P97436 B530045E10Rik-202ENSMUST00000189035 3138 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
Nkx3-1P97436 1700019J19Rik-202ENSMUST00000213583 1856 ntTSL 5 BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Olfr75-ps1-203ENSMUST00000144832 2655 ntTSL 2 BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Fgf7-201ENSMUST00000064794 2672 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
Nkx3-1P97436 AI987944-201ENSMUST00000071804 2671 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Amy2a3-201ENSMUST00000179314 3717 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Amy2a4-201ENSMUST00000179568 3717 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Amy2a2-201ENSMUST00000098667 3717 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Hnmt-201ENSMUST00000051416 1656 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm830-201ENSMUST00000142458 3502 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
Nkx3-1P97436 Gm37205-201ENSMUST00000194820 2736 ntBASIC4.44□□□□□ -1.7
Nkx3-1P97436 Scaper-205ENSMUST00000217647 4370 ntAPPRIS P2 TSL 5 BASIC4.44□□□□□ -1.7
Nkx3-1P97436 Ankrd49-202ENSMUST00000214456 3207 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
Nkx3-1P97436 Dach2-204ENSMUST00000113380 2894 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
Nkx3-1P97436 Slc10a2-201ENSMUST00000023835 4152 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
Nkx3-1P97436 Gm5925-201ENSMUST00000105016 1497 ntBASIC4.44□□□□□ -1.7
Nkx3-1P97436 Olfr1120-202ENSMUST00000215163 4404 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
Nkx3-1P97436 Gm2539-201ENSMUST00000180720 2411 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
Nkx3-1P97436 AC154573.1-201ENSMUST00000225913 4659 ntBASIC4.44□□□□□ -1.7
Nkx3-1P97436 Fam107b-209ENSMUST00000226435 3602 ntBASIC4.44□□□□□ -1.7
Nkx3-1P97436 Ush2a-201ENSMUST00000060479 15695 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
Nkx3-1P97436 Gm37776-201ENSMUST00000193471 2497 ntBASIC4.44□□□□□ -1.7
Nkx3-1P97436 Cntnap5c-201ENSMUST00000076038 3931 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
Nkx3-1P97436 Olfr1383-202ENSMUST00000204706 4168 ntAPPRIS P1 TSL 3 BASIC4.44□□□□□ -1.7
Nkx3-1P97436 AC131586.2-202ENSMUST00000227016 2705 ntBASIC4.44□□□□□ -1.7
Nkx3-1P97436 Gm22020-201ENSMUST00000104358 136 ntBASIC4.44□□□□□ -1.7
Nkx3-1P97436 Mup6-201ENSMUST00000107517 926 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
Nkx3-1P97436 Scimp-202ENSMUST00000108534 1080 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
Nkx3-1P97436 Gm12683-201ENSMUST00000117528 415 ntBASIC4.44□□□□□ -1.7
Nkx3-1P97436 Gm15297-201ENSMUST00000117795 290 ntBASIC4.44□□□□□ -1.7
Nkx3-1P97436 Gm13506-201ENSMUST00000120391 1083 ntBASIC4.44□□□□□ -1.7
Nkx3-1P97436 Gm13024-201ENSMUST00000121756 718 ntBASIC4.44□□□□□ -1.7
Nkx3-1P97436 n-R5s98-201ENSMUST00000122549 119 ntBASIC4.44□□□□□ -1.7
Nkx3-1P97436 Gm15687-201ENSMUST00000141440 269 ntTSL 3 BASIC4.44□□□□□ -1.7
Nkx3-1P97436 4930563I02Rik-202ENSMUST00000154835 971 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
Nkx3-1P97436 Smdt1-202ENSMUST00000159054 294 ntTSL 5 BASIC4.44□□□□□ -1.7
Nkx3-1P97436 Skint1-204ENSMUST00000162158 1260 ntAPPRIS P2 TSL 1 (best) BASIC4.44□□□□□ -1.7
Nkx3-1P97436 Vmn1r57-201ENSMUST00000170780 933 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
Nkx3-1P97436 Gm27202-201ENSMUST00000183838 512 ntTSL 5 BASIC4.44□□□□□ -1.7
Nkx3-1P97436 Ly6a-203ENSMUST00000187171 853 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
Nkx3-1P97436 Ralyl-205ENSMUST00000192209 662 ntTSL 3 BASIC4.44□□□□□ -1.7
Nkx3-1P97436 Gm8953-201ENSMUST00000198497 904 ntTSL 5 BASIC4.44□□□□□ -1.7
Nkx3-1P97436 Gm42663-201ENSMUST00000199883 351 ntBASIC4.44□□□□□ -1.7
Nkx3-1P97436 Gm43418-201ENSMUST00000201334 428 ntBASIC4.44□□□□□ -1.7
Nkx3-1P97436 Gm4602-201ENSMUST00000203198 308 ntBASIC4.44□□□□□ -1.7
Nkx3-1P97436 Gm30313-201ENSMUST00000216806 597 ntTSL 3 BASIC4.44□□□□□ -1.7
Nkx3-1P97436 4930448C13Rik-204ENSMUST00000221610 1044 ntTSL 5 BASIC4.44□□□□□ -1.7
Nkx3-1P97436 Olfr697-201ENSMUST00000050541 1047 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
Retrieved 100 of 76,532 protein–RNA pairs in 90.7 ms