Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Vps53Q8CCB4 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
Vps53Q8CCB4 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC20.67■□□□□ 0.9
Vps53Q8CCB4 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Vps53Q8CCB4 Gm44549-201ENSMUST00000208351 577 ntBASIC20.67■□□□□ 0.9
Vps53Q8CCB4 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Vps53Q8CCB4 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC20.67■□□□□ 0.9
Vps53Q8CCB4 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Vps53Q8CCB4 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Vps53Q8CCB4 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
Vps53Q8CCB4 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Vps53Q8CCB4 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Vps53Q8CCB4 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Vps53Q8CCB4 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Vps53Q8CCB4 Gm715-201ENSMUST00000117865 831 ntBASIC20.66■□□□□ 0.9
Vps53Q8CCB4 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC20.66■□□□□ 0.9
Vps53Q8CCB4 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Vps53Q8CCB4 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Vps53Q8CCB4 Gm21596-201ENSMUST00000178049 1316 ntBASIC20.66■□□□□ 0.9
Vps53Q8CCB4 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Vps53Q8CCB4 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Vps53Q8CCB4 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Vps53Q8CCB4 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Vps53Q8CCB4 Gm38308-201ENSMUST00000194934 1809 ntBASIC20.66■□□□□ 0.9
Vps53Q8CCB4 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
Vps53Q8CCB4 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Vps53Q8CCB4 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Vps53Q8CCB4 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Vps53Q8CCB4 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Vps53Q8CCB4 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Vps53Q8CCB4 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Vps53Q8CCB4 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
Vps53Q8CCB4 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Vps53Q8CCB4 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC20.65■□□□□ 0.9
Vps53Q8CCB4 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC20.65■□□□□ 0.9
Vps53Q8CCB4 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC20.65■□□□□ 0.9
Vps53Q8CCB4 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC20.65■□□□□ 0.9
Vps53Q8CCB4 AC160393.1-201ENSMUST00000218378 1279 ntBASIC20.65■□□□□ 0.9
Vps53Q8CCB4 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Vps53Q8CCB4 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Vps53Q8CCB4 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Vps53Q8CCB4 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Vps53Q8CCB4 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Vps53Q8CCB4 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Vps53Q8CCB4 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC20.64■□□□□ 0.9
Vps53Q8CCB4 AC121961.1-201ENSMUST00000218594 1779 ntBASIC20.64■□□□□ 0.9
Vps53Q8CCB4 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Vps53Q8CCB4 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Vps53Q8CCB4 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Vps53Q8CCB4 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Vps53Q8CCB4 Gm11249-201ENSMUST00000117071 859 ntBASIC20.64■□□□□ 0.89
Vps53Q8CCB4 AL672049.1-201ENSMUST00000197943 91 ntBASIC20.64■□□□□ 0.89
Vps53Q8CCB4 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Vps53Q8CCB4 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Vps53Q8CCB4 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Vps53Q8CCB4 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Vps53Q8CCB4 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Vps53Q8CCB4 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Vps53Q8CCB4 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Vps53Q8CCB4 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Vps53Q8CCB4 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Vps53Q8CCB4 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Vps53Q8CCB4 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Vps53Q8CCB4 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Vps53Q8CCB4 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Vps53Q8CCB4 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Vps53Q8CCB4 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC20.63■□□□□ 0.89
Vps53Q8CCB4 Gm29994-201ENSMUST00000195495 1193 ntBASIC20.63■□□□□ 0.89
Vps53Q8CCB4 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Vps53Q8CCB4 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Vps53Q8CCB4 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Vps53Q8CCB4 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Vps53Q8CCB4 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Vps53Q8CCB4 Nrn1-203ENSMUST00000223611 1443 ntBASIC20.62■□□□□ 0.89
Vps53Q8CCB4 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Vps53Q8CCB4 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
Vps53Q8CCB4 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC20.62■□□□□ 0.89
Vps53Q8CCB4 Krtap5-1-202ENSMUST00000188274 742 ntBASIC20.62■□□□□ 0.89
Vps53Q8CCB4 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
Vps53Q8CCB4 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Vps53Q8CCB4 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Vps53Q8CCB4 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC20.62■□□□□ 0.89
Vps53Q8CCB4 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Vps53Q8CCB4 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Vps53Q8CCB4 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC20.62■□□□□ 0.89
Vps53Q8CCB4 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Vps53Q8CCB4 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Vps53Q8CCB4 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Vps53Q8CCB4 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms