Protein–RNA interactions for Protein: Q8BJF9

Chmp2b, Charged multivesicular body protein 2b, mousemouse

Predictions only

Length 213 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp2bQ8BJF9 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Chmp2bQ8BJF9 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
Chmp2bQ8BJF9 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2bQ8BJF9 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2bQ8BJF9 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2bQ8BJF9 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2bQ8BJF9 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2bQ8BJF9 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2bQ8BJF9 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Chmp2bQ8BJF9 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2bQ8BJF9 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2bQ8BJF9 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2bQ8BJF9 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2bQ8BJF9 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2bQ8BJF9 Gm6598-201ENSMUST00000202719 2615 ntBASIC18.16■□□□□ 0.5
Chmp2bQ8BJF9 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Chmp2bQ8BJF9 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2bQ8BJF9 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC18.16■□□□□ 0.5
Chmp2bQ8BJF9 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2bQ8BJF9 Gm10033-202ENSMUST00000211874 928 ntBASIC18.16■□□□□ 0.5
Chmp2bQ8BJF9 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2bQ8BJF9 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Chmp2bQ8BJF9 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2bQ8BJF9 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2bQ8BJF9 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2bQ8BJF9 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2bQ8BJF9 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2bQ8BJF9 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2bQ8BJF9 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2bQ8BJF9 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2bQ8BJF9 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2bQ8BJF9 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2bQ8BJF9 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2bQ8BJF9 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2bQ8BJF9 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2bQ8BJF9 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2bQ8BJF9 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2bQ8BJF9 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2bQ8BJF9 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2bQ8BJF9 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2bQ8BJF9 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2bQ8BJF9 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2bQ8BJF9 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2bQ8BJF9 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Chmp2bQ8BJF9 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2bQ8BJF9 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2bQ8BJF9 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC18.14■□□□□ 0.49
Chmp2bQ8BJF9 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2bQ8BJF9 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2bQ8BJF9 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2bQ8BJF9 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2bQ8BJF9 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2bQ8BJF9 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC18.14■□□□□ 0.49
Chmp2bQ8BJF9 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2bQ8BJF9 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2bQ8BJF9 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC18.14■□□□□ 0.49
Chmp2bQ8BJF9 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2bQ8BJF9 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2bQ8BJF9 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Chmp2bQ8BJF9 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2bQ8BJF9 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2bQ8BJF9 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2bQ8BJF9 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2bQ8BJF9 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp2bQ8BJF9 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp2bQ8BJF9 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp2bQ8BJF9 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp2bQ8BJF9 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp2bQ8BJF9 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp2bQ8BJF9 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Chmp2bQ8BJF9 Gm8969-201ENSMUST00000199694 526 ntBASIC18.13■□□□□ 0.49
Chmp2bQ8BJF9 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp2bQ8BJF9 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp2bQ8BJF9 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp2bQ8BJF9 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC18.13■□□□□ 0.49
Chmp2bQ8BJF9 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Chmp2bQ8BJF9 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp2bQ8BJF9 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp2bQ8BJF9 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp2bQ8BJF9 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp2bQ8BJF9 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Chmp2bQ8BJF9 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Chmp2bQ8BJF9 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chmp2bQ8BJF9 Gm5898-201ENSMUST00000121016 2071 ntBASIC18.12■□□□□ 0.49
Chmp2bQ8BJF9 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Chmp2bQ8BJF9 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC18.12■□□□□ 0.49
Chmp2bQ8BJF9 Gm18671-201ENSMUST00000214826 683 ntBASIC18.12■□□□□ 0.49
Chmp2bQ8BJF9 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC18.12■□□□□ 0.49
Chmp2bQ8BJF9 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chmp2bQ8BJF9 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chmp2bQ8BJF9 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chmp2bQ8BJF9 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chmp2bQ8BJF9 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chmp2bQ8BJF9 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chmp2bQ8BJF9 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chmp2bQ8BJF9 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chmp2bQ8BJF9 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chmp2bQ8BJF9 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Chmp2bQ8BJF9 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chmp2bQ8BJF9 Idnk-204ENSMUST00000226010 1898 ntBASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms