Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Gm5898-201ENSMUST00000121016 2071 ntBASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Gm37563-201ENSMUST00000192580 1513 ntBASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc40Q8BI79 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Ccdc40Q8BI79 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ccdc40Q8BI79 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC18.47■□□□□ 0.55
Ccdc40Q8BI79 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.47■□□□□ 0.55
Ccdc40Q8BI79 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Ccdc40Q8BI79 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ccdc40Q8BI79 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Ccdc40Q8BI79 Gm12933-201ENSMUST00000120203 872 ntBASIC18.47■□□□□ 0.55
Ccdc40Q8BI79 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC18.47■□□□□ 0.55
Ccdc40Q8BI79 Mir5133-201ENSMUST00000174955 77 ntBASIC18.47■□□□□ 0.55
Ccdc40Q8BI79 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC18.47■□□□□ 0.55
Ccdc40Q8BI79 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ccdc40Q8BI79 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Ccdc40Q8BI79 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ccdc40Q8BI79 Tgds-204ENSMUST00000228543 1594 ntBASIC18.47■□□□□ 0.55
Ccdc40Q8BI79 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Gm15635-204ENSMUST00000208024 2539 ntBASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Ccdc40Q8BI79 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Ccdc40Q8BI79 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Gm37179-201ENSMUST00000194862 823 ntBASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ccdc40Q8BI79 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ccdc40Q8BI79 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ccdc40Q8BI79 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Ccdc40Q8BI79 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
Ccdc40Q8BI79 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Ccdc40Q8BI79 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Ccdc40Q8BI79 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC18.44■□□□□ 0.54
Ccdc40Q8BI79 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC18.44■□□□□ 0.54
Ccdc40Q8BI79 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC18.44■□□□□ 0.54
Ccdc40Q8BI79 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ccdc40Q8BI79 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC18.44■□□□□ 0.54
Ccdc40Q8BI79 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ccdc40Q8BI79 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms