Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Cln3Q61124 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Cln3Q61124 Gm29791-202ENSMUST00000207888 369 ntBASIC19.54■□□□□ 0.72
Cln3Q61124 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cln3Q61124 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cln3Q61124 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cln3Q61124 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cln3Q61124 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC19.54■□□□□ 0.72
Cln3Q61124 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cln3Q61124 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Cln3Q61124 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Cln3Q61124 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Cln3Q61124 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Cln3Q61124 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Cln3Q61124 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Cln3Q61124 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
Cln3Q61124 Gm10418-201ENSMUST00000100943 576 ntBASIC19.53■□□□□ 0.72
Cln3Q61124 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
Cln3Q61124 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC19.53■□□□□ 0.72
Cln3Q61124 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Cln3Q61124 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Cln3Q61124 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC19.53■□□□□ 0.72
Cln3Q61124 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Cln3Q61124 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Cln3Q61124 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Cln3Q61124 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Cln3Q61124 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cln3Q61124 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Cln3Q61124 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cln3Q61124 Gm9103-201ENSMUST00000119371 405 ntBASIC19.52■□□□□ 0.72
Cln3Q61124 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Cln3Q61124 Gm17661-201ENSMUST00000170317 270 ntBASIC19.52■□□□□ 0.72
Cln3Q61124 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC19.52■□□□□ 0.72
Cln3Q61124 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC19.52■□□□□ 0.72
Cln3Q61124 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cln3Q61124 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cln3Q61124 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cln3Q61124 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cln3Q61124 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cln3Q61124 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cln3Q61124 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cln3Q61124 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Cln3Q61124 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cln3Q61124 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cln3Q61124 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cln3Q61124 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cln3Q61124 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cln3Q61124 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cln3Q61124 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Cln3Q61124 Gm21559-201ENSMUST00000220638 855 ntBASIC19.51■□□□□ 0.71
Cln3Q61124 Gm8587-201ENSMUST00000076538 843 ntBASIC19.51■□□□□ 0.71
Cln3Q61124 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Cln3Q61124 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC19.51■□□□□ 0.71
Cln3Q61124 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cln3Q61124 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
Cln3Q61124 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cln3Q61124 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cln3Q61124 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Cln3Q61124 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cln3Q61124 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cln3Q61124 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC19.5■□□□□ 0.71
Cln3Q61124 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cln3Q61124 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cln3Q61124 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cln3Q61124 Gm14859-201ENSMUST00000117752 357 ntBASIC19.5■□□□□ 0.71
Cln3Q61124 Gm7284-201ENSMUST00000131667 944 ntBASIC19.5■□□□□ 0.71
Cln3Q61124 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Cln3Q61124 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cln3Q61124 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cln3Q61124 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Cln3Q61124 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cln3Q61124 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Cln3Q61124 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Cln3Q61124 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Cln3Q61124 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cln3Q61124 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cln3Q61124 Gm25016-201ENSMUST00000158399 131 ntBASIC19.49■□□□□ 0.71
Cln3Q61124 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Cln3Q61124 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
Cln3Q61124 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cln3Q61124 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cln3Q61124 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Cln3Q61124 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cln3Q61124 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cln3Q61124 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cln3Q61124 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cln3Q61124 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
Cln3Q61124 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cln3Q61124 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Cln3Q61124 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Cln3Q61124 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cln3Q61124 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Cln3Q61124 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cln3Q61124 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Cln3Q61124 Gm43213-201ENSMUST00000151866 1790 ntBASIC19.48■□□□□ 0.71
Cln3Q61124 Gm13474-201ENSMUST00000122466 815 ntBASIC19.48■□□□□ 0.71
Cln3Q61124 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC19.48■□□□□ 0.71
Cln3Q61124 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Cln3Q61124 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cln3Q61124 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 48 ms