Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC17.26■□□□□ 0.35
Col27a1Q5QNQ9 Ighv6-1-201ENSMUST00000193612 343 ntBASIC17.26■□□□□ 0.35
Col27a1Q5QNQ9 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC17.26■□□□□ 0.35
Col27a1Q5QNQ9 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC17.26■□□□□ 0.35
Col27a1Q5QNQ9 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC17.26■□□□□ 0.35
Col27a1Q5QNQ9 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col27a1Q5QNQ9 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Col27a1Q5QNQ9 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC17.25■□□□□ 0.35
Col27a1Q5QNQ9 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col27a1Q5QNQ9 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC17.25■□□□□ 0.35
Col27a1Q5QNQ9 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC17.25■□□□□ 0.35
Col27a1Q5QNQ9 Gm29791-202ENSMUST00000207888 369 ntBASIC17.25■□□□□ 0.35
Col27a1Q5QNQ9 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC17.25■□□□□ 0.35
Col27a1Q5QNQ9 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC17.25■□□□□ 0.35
Col27a1Q5QNQ9 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Col27a1Q5QNQ9 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col27a1Q5QNQ9 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col27a1Q5QNQ9 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col27a1Q5QNQ9 Gm34220-201ENSMUST00000223001 2709 ntBASIC17.25■□□□□ 0.35
Col27a1Q5QNQ9 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC17.24■□□□□ 0.35
Col27a1Q5QNQ9 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col27a1Q5QNQ9 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC17.24■□□□□ 0.35
Col27a1Q5QNQ9 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col27a1Q5QNQ9 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col27a1Q5QNQ9 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col27a1Q5QNQ9 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col27a1Q5QNQ9 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col27a1Q5QNQ9 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col27a1Q5QNQ9 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col27a1Q5QNQ9 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col27a1Q5QNQ9 Gm11452-201ENSMUST00000122376 690 ntBASIC17.24■□□□□ 0.35
Col27a1Q5QNQ9 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col27a1Q5QNQ9 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC17.23■□□□□ 0.35
Col27a1Q5QNQ9 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col27a1Q5QNQ9 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col27a1Q5QNQ9 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col27a1Q5QNQ9 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Col27a1Q5QNQ9 Rncr4-201ENSMUST00000194541 2234 ntBASIC17.23■□□□□ 0.35
Col27a1Q5QNQ9 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col27a1Q5QNQ9 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col27a1Q5QNQ9 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col27a1Q5QNQ9 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col27a1Q5QNQ9 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col27a1Q5QNQ9 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col27a1Q5QNQ9 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col27a1Q5QNQ9 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col27a1Q5QNQ9 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col27a1Q5QNQ9 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col27a1Q5QNQ9 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col27a1Q5QNQ9 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Col27a1Q5QNQ9 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Col27a1Q5QNQ9 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col27a1Q5QNQ9 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col27a1Q5QNQ9 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Col27a1Q5QNQ9 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col27a1Q5QNQ9 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col27a1Q5QNQ9 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col27a1Q5QNQ9 Gm6277-202ENSMUST00000224036 2779 ntBASIC17.21■□□□□ 0.35
Col27a1Q5QNQ9 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col27a1Q5QNQ9 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col27a1Q5QNQ9 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col27a1Q5QNQ9 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col27a1Q5QNQ9 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col27a1Q5QNQ9 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col27a1Q5QNQ9 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col27a1Q5QNQ9 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Col27a1Q5QNQ9 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col27a1Q5QNQ9 Gm12895-201ENSMUST00000122214 226 ntBASIC17.21■□□□□ 0.35
Col27a1Q5QNQ9 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col27a1Q5QNQ9 AC138767.1-201ENSMUST00000222661 415 ntBASIC17.21■□□□□ 0.35
Col27a1Q5QNQ9 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col27a1Q5QNQ9 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col27a1Q5QNQ9 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col27a1Q5QNQ9 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col27a1Q5QNQ9 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col27a1Q5QNQ9 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col27a1Q5QNQ9 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col27a1Q5QNQ9 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC17.2■□□□□ 0.34
Col27a1Q5QNQ9 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col27a1Q5QNQ9 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col27a1Q5QNQ9 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC17.2■□□□□ 0.34
Col27a1Q5QNQ9 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col27a1Q5QNQ9 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
Col27a1Q5QNQ9 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Col27a1Q5QNQ9 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col27a1Q5QNQ9 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col27a1Q5QNQ9 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC17.19■□□□□ 0.34
Col27a1Q5QNQ9 Vti1a-206ENSMUST00000225529 1244 ntBASIC17.19■□□□□ 0.34
Col27a1Q5QNQ9 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col27a1Q5QNQ9 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col27a1Q5QNQ9 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col27a1Q5QNQ9 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col27a1Q5QNQ9 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col27a1Q5QNQ9 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col27a1Q5QNQ9 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col27a1Q5QNQ9 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col27a1Q5QNQ9 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col27a1Q5QNQ9 Gm38308-201ENSMUST00000194934 1809 ntBASIC17.19■□□□□ 0.34
Col27a1Q5QNQ9 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Col27a1Q5QNQ9 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 64.6 ms