Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim40Q3UWA4 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim40Q3UWA4 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim40Q3UWA4 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC16.69■□□□□ 0.26
Trim40Q3UWA4 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trim40Q3UWA4 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim40Q3UWA4 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim40Q3UWA4 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC16.69■□□□□ 0.26
Trim40Q3UWA4 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Trim40Q3UWA4 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim40Q3UWA4 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
Trim40Q3UWA4 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trim40Q3UWA4 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim40Q3UWA4 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Trim40Q3UWA4 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim40Q3UWA4 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC16.68■□□□□ 0.26
Trim40Q3UWA4 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC16.68■□□□□ 0.26
Trim40Q3UWA4 Appbp2os-202ENSMUST00000206972 447 ntBASIC16.68■□□□□ 0.26
Trim40Q3UWA4 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Trim40Q3UWA4 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim40Q3UWA4 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim40Q3UWA4 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Trim40Q3UWA4 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Trim40Q3UWA4 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim40Q3UWA4 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
Trim40Q3UWA4 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim40Q3UWA4 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim40Q3UWA4 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim40Q3UWA4 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim40Q3UWA4 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim40Q3UWA4 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim40Q3UWA4 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim40Q3UWA4 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Trim40Q3UWA4 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC16.67■□□□□ 0.26
Trim40Q3UWA4 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Trim40Q3UWA4 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Trim40Q3UWA4 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim40Q3UWA4 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trim40Q3UWA4 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim40Q3UWA4 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim40Q3UWA4 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim40Q3UWA4 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC16.67■□□□□ 0.26
Trim40Q3UWA4 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim40Q3UWA4 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim40Q3UWA4 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim40Q3UWA4 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trim40Q3UWA4 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC16.66■□□□□ 0.26
Trim40Q3UWA4 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim40Q3UWA4 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim40Q3UWA4 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim40Q3UWA4 Gm45774-201ENSMUST00000211992 2665 ntBASIC16.66■□□□□ 0.26
Trim40Q3UWA4 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC16.66■□□□□ 0.26
Trim40Q3UWA4 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Trim40Q3UWA4 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim40Q3UWA4 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim40Q3UWA4 Gm26971-201ENSMUST00000182423 1072 ntBASIC16.66■□□□□ 0.26
Trim40Q3UWA4 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Trim40Q3UWA4 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim40Q3UWA4 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim40Q3UWA4 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Trim40Q3UWA4 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim40Q3UWA4 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
Trim40Q3UWA4 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim40Q3UWA4 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Trim40Q3UWA4 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim40Q3UWA4 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim40Q3UWA4 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim40Q3UWA4 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Trim40Q3UWA4 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim40Q3UWA4 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim40Q3UWA4 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim40Q3UWA4 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim40Q3UWA4 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Trim40Q3UWA4 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim40Q3UWA4 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim40Q3UWA4 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Trim40Q3UWA4 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim40Q3UWA4 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim40Q3UWA4 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Trim40Q3UWA4 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim40Q3UWA4 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim40Q3UWA4 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC16.65■□□□□ 0.26
Trim40Q3UWA4 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Trim40Q3UWA4 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Trim40Q3UWA4 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Trim40Q3UWA4 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Trim40Q3UWA4 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.26
Trim40Q3UWA4 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Trim40Q3UWA4 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim40Q3UWA4 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim40Q3UWA4 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim40Q3UWA4 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim40Q3UWA4 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim40Q3UWA4 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim40Q3UWA4 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim40Q3UWA4 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim40Q3UWA4 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim40Q3UWA4 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC16.64■□□□□ 0.25
Trim40Q3UWA4 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim40Q3UWA4 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 52 ms