Protein–RNA interactions for Protein: Q3KNL4

UPF0728 protein C10orf53 homolog, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Q3KNL4 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Q3KNL4 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Q3KNL4 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Q3KNL4 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Q3KNL4 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Q3KNL4 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Q3KNL4 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Q3KNL4 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC17.48■□□□□ 0.39
Q3KNL4 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Q3KNL4 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Q3KNL4 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Q3KNL4 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Q3KNL4 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Q3KNL4 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Q3KNL4 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC17.47■□□□□ 0.39
Q3KNL4 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Q3KNL4 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Q3KNL4 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC17.47■□□□□ 0.39
Q3KNL4 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Q3KNL4 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Q3KNL4 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC17.47■□□□□ 0.39
Q3KNL4 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Q3KNL4 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Q3KNL4 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Q3KNL4 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Q3KNL4 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Q3KNL4 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Q3KNL4 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Q3KNL4 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Q3KNL4 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Q3KNL4 Gm43702-201ENSMUST00000198772 2546 ntBASIC17.46■□□□□ 0.39
Q3KNL4 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Q3KNL4 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC17.46■□□□□ 0.39
Q3KNL4 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Q3KNL4 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Q3KNL4 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Q3KNL4 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Q3KNL4 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Q3KNL4 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Q3KNL4 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Q3KNL4 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
Q3KNL4 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC17.46■□□□□ 0.39
Q3KNL4 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Q3KNL4 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.38
Q3KNL4 Gm37374-201ENSMUST00000194954 1829 ntBASIC17.45■□□□□ 0.38
Q3KNL4 Gm42900-201ENSMUST00000197184 2167 ntBASIC17.45■□□□□ 0.38
Q3KNL4 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Q3KNL4 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Q3KNL4 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Q3KNL4 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC17.45■□□□□ 0.38
Q3KNL4 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Q3KNL4 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Q3KNL4 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Q3KNL4 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Q3KNL4 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
Q3KNL4 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Q3KNL4 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Q3KNL4 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Q3KNL4 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Q3KNL4 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Q3KNL4 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Q3KNL4 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Q3KNL4 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Q3KNL4 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Q3KNL4 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Q3KNL4 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Q3KNL4 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Q3KNL4 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Q3KNL4 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Q3KNL4 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Q3KNL4 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Q3KNL4 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC17.44■□□□□ 0.38
Q3KNL4 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC17.44■□□□□ 0.38
Q3KNL4 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Q3KNL4 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Q3KNL4 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Q3KNL4 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
Q3KNL4 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Q3KNL4 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Q3KNL4 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
Q3KNL4 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Q3KNL4 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Q3KNL4 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Q3KNL4 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Q3KNL4 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC17.43■□□□□ 0.38
Q3KNL4 AV356131-201ENSMUST00000206201 750 ntBASIC17.43■□□□□ 0.38
Q3KNL4 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC17.43■□□□□ 0.38
Q3KNL4 Fcho2-208ENSMUST00000224992 2964 ntBASIC17.43■□□□□ 0.38
Q3KNL4 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Q3KNL4 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Q3KNL4 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Q3KNL4 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Q3KNL4 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
Q3KNL4 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Q3KNL4 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Q3KNL4 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC17.43■□□□□ 0.38
Q3KNL4 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Q3KNL4 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Q3KNL4 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Q3KNL4 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC17.42■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms