Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Shmt1P50431 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Shmt1P50431 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Shmt1P50431 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC18.79■□□□□ 0.6
Shmt1P50431 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Shmt1P50431 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Shmt1P50431 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
Shmt1P50431 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Shmt1P50431 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Shmt1P50431 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Shmt1P50431 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Shmt1P50431 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC18.78■□□□□ 0.6
Shmt1P50431 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Shmt1P50431 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Shmt1P50431 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Shmt1P50431 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Shmt1P50431 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC18.78■□□□□ 0.6
Shmt1P50431 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Shmt1P50431 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Shmt1P50431 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Shmt1P50431 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Shmt1P50431 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Shmt1P50431 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Shmt1P50431 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Shmt1P50431 Gm13401-201ENSMUST00000117074 291 ntBASIC18.77■□□□□ 0.6
Shmt1P50431 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC18.77■□□□□ 0.6
Shmt1P50431 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Shmt1P50431 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC18.77■□□□□ 0.6
Shmt1P50431 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Shmt1P50431 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Shmt1P50431 Gm9484-201ENSMUST00000195892 1159 ntBASIC18.77■□□□□ 0.6
Shmt1P50431 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Shmt1P50431 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Shmt1P50431 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Shmt1P50431 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC18.77■□□□□ 0.6
Shmt1P50431 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Shmt1P50431 Idnk-204ENSMUST00000226010 1898 ntBASIC18.77■□□□□ 0.6
Shmt1P50431 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Shmt1P50431 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Shmt1P50431 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shmt1P50431 Dmtn-207ENSMUST00000228001 2437 ntBASIC18.76■□□□□ 0.59
Shmt1P50431 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shmt1P50431 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shmt1P50431 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Shmt1P50431 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shmt1P50431 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Shmt1P50431 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shmt1P50431 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shmt1P50431 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Shmt1P50431 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC18.76■□□□□ 0.59
Shmt1P50431 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Shmt1P50431 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shmt1P50431 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC18.76■□□□□ 0.59
Shmt1P50431 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Shmt1P50431 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shmt1P50431 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Shmt1P50431 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shmt1P50431 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shmt1P50431 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shmt1P50431 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shmt1P50431 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Shmt1P50431 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Shmt1P50431 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Shmt1P50431 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC18.75■□□□□ 0.59
Shmt1P50431 Gm11643-201ENSMUST00000119578 864 ntBASIC18.75■□□□□ 0.59
Shmt1P50431 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Shmt1P50431 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Shmt1P50431 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Shmt1P50431 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Shmt1P50431 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Shmt1P50431 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shmt1P50431 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC18.74■□□□□ 0.59
Shmt1P50431 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Shmt1P50431 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shmt1P50431 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC18.74■□□□□ 0.59
Shmt1P50431 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.74■□□□□ 0.59
Shmt1P50431 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shmt1P50431 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shmt1P50431 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shmt1P50431 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Shmt1P50431 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
Shmt1P50431 Gm16042-201ENSMUST00000204813 1247 ntBASIC18.74■□□□□ 0.59
Shmt1P50431 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
Shmt1P50431 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC18.74■□□□□ 0.59
Shmt1P50431 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shmt1P50431 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shmt1P50431 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shmt1P50431 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shmt1P50431 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shmt1P50431 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shmt1P50431 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shmt1P50431 Gm7712-202ENSMUST00000222331 1510 ntBASIC18.74■□□□□ 0.59
Shmt1P50431 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shmt1P50431 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shmt1P50431 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shmt1P50431 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shmt1P50431 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.73■□□□□ 0.59
Shmt1P50431 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Shmt1P50431 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Shmt1P50431 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms