Protein–RNA interactions for Protein: P50220

Nkx2-1, Homeobox protein Nkx-2.1, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-1P50220 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx2-1P50220 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx2-1P50220 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx2-1P50220 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx2-1P50220 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Nkx2-1P50220 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx2-1P50220 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx2-1P50220 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC14.75□□□□□ -0.05
Nkx2-1P50220 Gm7292-201ENSMUST00000194706 2527 ntBASIC14.75□□□□□ -0.05
Nkx2-1P50220 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC14.75□□□□□ -0.05
Nkx2-1P50220 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx2-1P50220 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Nkx2-1P50220 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx2-1P50220 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx2-1P50220 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx2-1P50220 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx2-1P50220 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx2-1P50220 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx2-1P50220 Gm43808-201ENSMUST00000202534 2065 ntBASIC14.74□□□□□ -0.05
Nkx2-1P50220 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx2-1P50220 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx2-1P50220 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx2-1P50220 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Nkx2-1P50220 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Nkx2-1P50220 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx2-1P50220 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx2-1P50220 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx2-1P50220 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx2-1P50220 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx2-1P50220 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx2-1P50220 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC14.74□□□□□ -0.05
Nkx2-1P50220 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Nkx2-1P50220 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx2-1P50220 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC14.73□□□□□ -0.05
Nkx2-1P50220 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx2-1P50220 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx2-1P50220 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx2-1P50220 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC14.73□□□□□ -0.05
Nkx2-1P50220 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx2-1P50220 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Nkx2-1P50220 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx2-1P50220 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Nkx2-1P50220 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC14.73□□□□□ -0.05
Nkx2-1P50220 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx2-1P50220 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Nkx2-1P50220 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx2-1P50220 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx2-1P50220 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx2-1P50220 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx2-1P50220 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx2-1P50220 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx2-1P50220 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC14.73□□□□□ -0.05
Nkx2-1P50220 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx2-1P50220 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx2-1P50220 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx2-1P50220 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx2-1P50220 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx2-1P50220 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx2-1P50220 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx2-1P50220 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx2-1P50220 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx2-1P50220 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC14.72□□□□□ -0.05
Nkx2-1P50220 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx2-1P50220 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.05
Nkx2-1P50220 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx2-1P50220 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx2-1P50220 Gm37374-201ENSMUST00000194954 1829 ntBASIC14.72□□□□□ -0.05
Nkx2-1P50220 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx2-1P50220 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC14.72□□□□□ -0.05
Nkx2-1P50220 Gm26833-201ENSMUST00000180899 440 ntBASIC14.72□□□□□ -0.05
Nkx2-1P50220 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx2-1P50220 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
Nkx2-1P50220 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx2-1P50220 Gm8309-201ENSMUST00000206627 1448 ntBASIC14.72□□□□□ -0.05
Nkx2-1P50220 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx2-1P50220 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx2-1P50220 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx2-1P50220 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Nkx2-1P50220 Gm43672-201ENSMUST00000199072 1731 ntBASIC14.72□□□□□ -0.05
Nkx2-1P50220 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
Nkx2-1P50220 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx2-1P50220 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx2-1P50220 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC14.71□□□□□ -0.05
Nkx2-1P50220 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx2-1P50220 Cxcl14-202ENSMUST00000224801 1467 ntBASIC14.71□□□□□ -0.05
Nkx2-1P50220 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx2-1P50220 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx2-1P50220 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx2-1P50220 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx2-1P50220 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC14.71□□□□□ -0.05
Nkx2-1P50220 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
Nkx2-1P50220 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx2-1P50220 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx2-1P50220 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
Nkx2-1P50220 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Nkx2-1P50220 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Nkx2-1P50220 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Nkx2-1P50220 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC14.7□□□□□ -0.06
Nkx2-1P50220 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Nkx2-1P50220 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms