Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sdc4O35988 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sdc4O35988 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC18.31■□□□□ 0.52
Sdc4O35988 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Sdc4O35988 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sdc4O35988 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Sdc4O35988 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sdc4O35988 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Sdc4O35988 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC18.3■□□□□ 0.52
Sdc4O35988 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sdc4O35988 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sdc4O35988 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Sdc4O35988 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Sdc4O35988 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Sdc4O35988 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Sdc4O35988 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
Sdc4O35988 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC18.3■□□□□ 0.52
Sdc4O35988 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sdc4O35988 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sdc4O35988 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sdc4O35988 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Sdc4O35988 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
Sdc4O35988 Gm43213-201ENSMUST00000151866 1790 ntBASIC18.3■□□□□ 0.52
Sdc4O35988 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sdc4O35988 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Sdc4O35988 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Sdc4O35988 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC18.29■□□□□ 0.52
Sdc4O35988 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sdc4O35988 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sdc4O35988 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Sdc4O35988 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
Sdc4O35988 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC18.29■□□□□ 0.52
Sdc4O35988 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC18.29■□□□□ 0.52
Sdc4O35988 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Sdc4O35988 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Sdc4O35988 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC18.29■□□□□ 0.52
Sdc4O35988 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Sdc4O35988 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sdc4O35988 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sdc4O35988 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Sdc4O35988 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sdc4O35988 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.28■□□□□ 0.52
Sdc4O35988 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC18.28■□□□□ 0.52
Sdc4O35988 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sdc4O35988 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sdc4O35988 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC18.28■□□□□ 0.52
Sdc4O35988 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC18.28■□□□□ 0.52
Sdc4O35988 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Sdc4O35988 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sdc4O35988 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sdc4O35988 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sdc4O35988 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Sdc4O35988 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sdc4O35988 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
Sdc4O35988 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sdc4O35988 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sdc4O35988 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
Sdc4O35988 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Sdc4O35988 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
Sdc4O35988 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC18.27■□□□□ 0.52
Sdc4O35988 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sdc4O35988 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sdc4O35988 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
Sdc4O35988 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
Sdc4O35988 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Sdc4O35988 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sdc4O35988 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Sdc4O35988 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sdc4O35988 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sdc4O35988 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Sdc4O35988 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sdc4O35988 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Sdc4O35988 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Sdc4O35988 Gm30025-201ENSMUST00000218555 728 ntBASIC18.26■□□□□ 0.51
Sdc4O35988 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sdc4O35988 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sdc4O35988 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sdc4O35988 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sdc4O35988 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sdc4O35988 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sdc4O35988 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sdc4O35988 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Sdc4O35988 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sdc4O35988 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Sdc4O35988 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Sdc4O35988 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Sdc4O35988 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC18.25■□□□□ 0.51
Sdc4O35988 Gm10517-202ENSMUST00000192970 758 ntBASIC18.25■□□□□ 0.51
Sdc4O35988 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC18.25■□□□□ 0.51
Sdc4O35988 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Sdc4O35988 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Sdc4O35988 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sdc4O35988 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Sdc4O35988 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sdc4O35988 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Sdc4O35988 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sdc4O35988 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sdc4O35988 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Sdc4O35988 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sdc4O35988 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms