Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Nr1i3O35627 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC19.1■□□□□ 0.65
Nr1i3O35627 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nr1i3O35627 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nr1i3O35627 Mir8112-201ENSMUST00000184382 131 ntBASIC19.1■□□□□ 0.65
Nr1i3O35627 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Nr1i3O35627 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC19.1■□□□□ 0.65
Nr1i3O35627 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Nr1i3O35627 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Nr1i3O35627 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nr1i3O35627 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nr1i3O35627 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nr1i3O35627 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Nr1i3O35627 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nr1i3O35627 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nr1i3O35627 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC19.09■□□□□ 0.65
Nr1i3O35627 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nr1i3O35627 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nr1i3O35627 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC19.09■□□□□ 0.65
Nr1i3O35627 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nr1i3O35627 Gm13148-201ENSMUST00000118892 745 ntBASIC19.09■□□□□ 0.65
Nr1i3O35627 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
Nr1i3O35627 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nr1i3O35627 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC19.09■□□□□ 0.65
Nr1i3O35627 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC19.09■□□□□ 0.65
Nr1i3O35627 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Nr1i3O35627 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Nr1i3O35627 AC121598.2-201ENSMUST00000228376 2325 ntBASIC19.09■□□□□ 0.65
Nr1i3O35627 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC19.09■□□□□ 0.65
Nr1i3O35627 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC19.09■□□□□ 0.65
Nr1i3O35627 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Nr1i3O35627 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Nr1i3O35627 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Nr1i3O35627 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
Nr1i3O35627 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
Nr1i3O35627 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Nr1i3O35627 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC19.08■□□□□ 0.64
Nr1i3O35627 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Nr1i3O35627 Rab3c-203ENSMUST00000224180 967 ntBASIC19.08■□□□□ 0.64
Nr1i3O35627 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Nr1i3O35627 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Nr1i3O35627 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Nr1i3O35627 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Nr1i3O35627 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Nr1i3O35627 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Nr1i3O35627 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC19.07■□□□□ 0.64
Nr1i3O35627 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Nr1i3O35627 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Nr1i3O35627 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Nr1i3O35627 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC19.07■□□□□ 0.64
Nr1i3O35627 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC19.07■□□□□ 0.64
Nr1i3O35627 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Nr1i3O35627 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Nr1i3O35627 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Nr1i3O35627 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Nr1i3O35627 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
Nr1i3O35627 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Nr1i3O35627 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC19.06■□□□□ 0.64
Nr1i3O35627 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC19.06■□□□□ 0.64
Nr1i3O35627 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Nr1i3O35627 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Nr1i3O35627 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Nr1i3O35627 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC19.06■□□□□ 0.64
Nr1i3O35627 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC19.06■□□□□ 0.64
Nr1i3O35627 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Nr1i3O35627 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
Nr1i3O35627 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC19.06■□□□□ 0.64
Nr1i3O35627 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Nr1i3O35627 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Nr1i3O35627 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Nr1i3O35627 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Nr1i3O35627 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
Nr1i3O35627 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nr1i3O35627 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC19.05■□□□□ 0.64
Nr1i3O35627 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nr1i3O35627 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nr1i3O35627 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nr1i3O35627 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nr1i3O35627 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nr1i3O35627 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nr1i3O35627 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nr1i3O35627 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nr1i3O35627 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Nr1i3O35627 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nr1i3O35627 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nr1i3O35627 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC19.05■□□□□ 0.64
Nr1i3O35627 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nr1i3O35627 Mir2861-201ENSMUST00000175539 82 ntBASIC19.05■□□□□ 0.64
Nr1i3O35627 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Nr1i3O35627 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nr1i3O35627 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
Nr1i3O35627 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
Nr1i3O35627 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nr1i3O35627 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nr1i3O35627 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nr1i3O35627 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC19.05■□□□□ 0.64
Nr1i3O35627 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nr1i3O35627 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
Nr1i3O35627 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nr1i3O35627 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms