Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Clk3O35492 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clk3O35492 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clk3O35492 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clk3O35492 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clk3O35492 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Clk3O35492 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC16.9■□□□□ 0.3
Clk3O35492 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Clk3O35492 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Clk3O35492 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Clk3O35492 Slc35b2-207ENSMUST00000226086 850 ntBASIC16.9■□□□□ 0.3
Clk3O35492 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clk3O35492 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clk3O35492 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Clk3O35492 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clk3O35492 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clk3O35492 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clk3O35492 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clk3O35492 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clk3O35492 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC16.9■□□□□ 0.3
Clk3O35492 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clk3O35492 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Clk3O35492 Gm38308-201ENSMUST00000194934 1809 ntBASIC16.89■□□□□ 0.29
Clk3O35492 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC16.89■□□□□ 0.29
Clk3O35492 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Clk3O35492 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Clk3O35492 Gm37179-201ENSMUST00000194862 823 ntBASIC16.89■□□□□ 0.29
Clk3O35492 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Clk3O35492 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC16.89■□□□□ 0.29
Clk3O35492 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Clk3O35492 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Clk3O35492 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Clk3O35492 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Clk3O35492 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
Clk3O35492 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC16.89■□□□□ 0.29
Clk3O35492 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Clk3O35492 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Clk3O35492 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Clk3O35492 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Clk3O35492 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Clk3O35492 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Clk3O35492 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Clk3O35492 Gm12933-201ENSMUST00000120203 872 ntBASIC16.88■□□□□ 0.29
Clk3O35492 Mir5133-201ENSMUST00000174955 77 ntBASIC16.88■□□□□ 0.29
Clk3O35492 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Clk3O35492 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC16.88■□□□□ 0.29
Clk3O35492 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Clk3O35492 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Clk3O35492 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Clk3O35492 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Clk3O35492 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Clk3O35492 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
Clk3O35492 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Clk3O35492 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Clk3O35492 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Clk3O35492 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Clk3O35492 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Clk3O35492 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Clk3O35492 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC16.87■□□□□ 0.29
Clk3O35492 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC16.87■□□□□ 0.29
Clk3O35492 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
Clk3O35492 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Clk3O35492 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Clk3O35492 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Clk3O35492 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Clk3O35492 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Clk3O35492 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Clk3O35492 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Clk3O35492 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Clk3O35492 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Clk3O35492 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Clk3O35492 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
Clk3O35492 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Clk3O35492 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Clk3O35492 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC16.86■□□□□ 0.29
Clk3O35492 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC16.86■□□□□ 0.29
Clk3O35492 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Clk3O35492 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Clk3O35492 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Clk3O35492 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Clk3O35492 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Clk3O35492 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Clk3O35492 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Clk3O35492 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Clk3O35492 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Clk3O35492 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Clk3O35492 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Clk3O35492 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Clk3O35492 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Clk3O35492 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Clk3O35492 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Clk3O35492 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
Clk3O35492 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Clk3O35492 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Clk3O35492 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Clk3O35492 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC16.85■□□□□ 0.29
Clk3O35492 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
Clk3O35492 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC16.85■□□□□ 0.29
Clk3O35492 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC16.85■□□□□ 0.29
Clk3O35492 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms