Protein–RNA interactions for Protein: A0A0A6YYE2

Trbv3, T cell receptor beta, variable 3 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv3A0A0A6YYE2 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
Trbv3A0A0A6YYE2 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trbv3A0A0A6YYE2 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Trbv3A0A0A6YYE2 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trbv3A0A0A6YYE2 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trbv3A0A0A6YYE2 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC13.71□□□□□ -0.21
Trbv3A0A0A6YYE2 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trbv3A0A0A6YYE2 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Trbv3A0A0A6YYE2 Gm5812-201ENSMUST00000061073 957 ntBASIC13.71□□□□□ -0.21
Trbv3A0A0A6YYE2 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Trbv3A0A0A6YYE2 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trbv3A0A0A6YYE2 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trbv3A0A0A6YYE2 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
Trbv3A0A0A6YYE2 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
Trbv3A0A0A6YYE2 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Trbv3A0A0A6YYE2 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trbv3A0A0A6YYE2 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trbv3A0A0A6YYE2 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trbv3A0A0A6YYE2 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Gm12922-201ENSMUST00000120626 809 ntBASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
Trbv3A0A0A6YYE2 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Gm13216-201ENSMUST00000117145 591 ntBASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Smad6-203ENSMUST00000179458 273 ntBASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Gm9959-201ENSMUST00000068277 390 ntBASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trbv3A0A0A6YYE2 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Flvcr1-202ENSMUST00000191946 1216 ntBASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trbv3A0A0A6YYE2 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trbv3A0A0A6YYE2 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trbv3A0A0A6YYE2 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trbv3A0A0A6YYE2 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trbv3A0A0A6YYE2 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trbv3A0A0A6YYE2 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trbv3A0A0A6YYE2 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Trbv3A0A0A6YYE2 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Trbv3A0A0A6YYE2 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Trbv3A0A0A6YYE2 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 72.3 ms