Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
Ddx55Q6ZPL9 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Ddx55Q6ZPL9 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Ddx55Q6ZPL9 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC28.65■■■□□ 2.18
Ddx55Q6ZPL9 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
Ddx55Q6ZPL9 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
Ddx55Q6ZPL9 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
Ddx55Q6ZPL9 Gm11175-201ENSMUST00000116172 543 ntBASIC28.64■■■□□ 2.18
Ddx55Q6ZPL9 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
Ddx55Q6ZPL9 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
Ddx55Q6ZPL9 Mir6538-201ENSMUST00000183713 110 ntBASIC28.62■■■□□ 2.17
Ddx55Q6ZPL9 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Ddx55Q6ZPL9 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Ddx55Q6ZPL9 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Ddx55Q6ZPL9 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC28.61■■■□□ 2.17
Ddx55Q6ZPL9 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Ddx55Q6ZPL9 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC28.58■■■□□ 2.17
Ddx55Q6ZPL9 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC28.58■■■□□ 2.17
Ddx55Q6ZPL9 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC28.57■■■□□ 2.16
Ddx55Q6ZPL9 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
Ddx55Q6ZPL9 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
Ddx55Q6ZPL9 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
Ddx55Q6ZPL9 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Ddx55Q6ZPL9 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC28.54■■■□□ 2.16
Ddx55Q6ZPL9 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC28.52■■■□□ 2.16
Ddx55Q6ZPL9 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
Ddx55Q6ZPL9 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC28.51■■■□□ 2.16
Ddx55Q6ZPL9 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Ddx55Q6ZPL9 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
Ddx55Q6ZPL9 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Ddx55Q6ZPL9 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
Ddx55Q6ZPL9 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC28.51■■■□□ 2.15
Ddx55Q6ZPL9 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC28.5■■■□□ 2.15
Ddx55Q6ZPL9 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
Ddx55Q6ZPL9 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
Ddx55Q6ZPL9 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC28.47■■■□□ 2.15
Ddx55Q6ZPL9 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC28.46■■■□□ 2.15
Ddx55Q6ZPL9 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
Ddx55Q6ZPL9 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC28.43■■■□□ 2.14
Ddx55Q6ZPL9 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC28.43■■■□□ 2.14
Ddx55Q6ZPL9 AC131739.1-201ENSMUST00000221692 1245 ntBASIC28.43■■■□□ 2.14
Ddx55Q6ZPL9 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Ddx55Q6ZPL9 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
Ddx55Q6ZPL9 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Ddx55Q6ZPL9 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
Ddx55Q6ZPL9 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
Ddx55Q6ZPL9 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
Ddx55Q6ZPL9 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
Ddx55Q6ZPL9 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Ddx55Q6ZPL9 Cap2-205ENSMUST00000225824 1634 ntBASIC28.38■■■□□ 2.13
Ddx55Q6ZPL9 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC28.38■■■□□ 2.13
Ddx55Q6ZPL9 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC28.36■■■□□ 2.13
Ddx55Q6ZPL9 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
Ddx55Q6ZPL9 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC28.36■■■□□ 2.13
Ddx55Q6ZPL9 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
Ddx55Q6ZPL9 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC28.35■■■□□ 2.13
Ddx55Q6ZPL9 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Ddx55Q6ZPL9 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Ddx55Q6ZPL9 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC28.33■■■□□ 2.13
Ddx55Q6ZPL9 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC28.32■■■□□ 2.12
Ddx55Q6ZPL9 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC28.32■■■□□ 2.12
Ddx55Q6ZPL9 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
Ddx55Q6ZPL9 Gm6345-201ENSMUST00000180378 1691 ntBASIC28.31■■■□□ 2.12
Ddx55Q6ZPL9 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC28.3■■■□□ 2.12
Ddx55Q6ZPL9 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC28.28■■■□□ 2.12
Ddx55Q6ZPL9 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC28.28■■■□□ 2.12
Ddx55Q6ZPL9 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC28.28■■■□□ 2.12
Ddx55Q6ZPL9 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Ddx55Q6ZPL9 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Ddx55Q6ZPL9 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC28.27■■■□□ 2.12
Ddx55Q6ZPL9 AC167019.3-201ENSMUST00000228225 1266 ntBASIC28.27■■■□□ 2.12
Ddx55Q6ZPL9 Gm6311-201ENSMUST00000073790 878 ntBASIC28.27■■■□□ 2.12
Ddx55Q6ZPL9 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Ddx55Q6ZPL9 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC28.26■■■□□ 2.11
Ddx55Q6ZPL9 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
Ddx55Q6ZPL9 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Ddx55Q6ZPL9 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.11
Ddx55Q6ZPL9 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Ddx55Q6ZPL9 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC28.23■■■□□ 2.11
Ddx55Q6ZPL9 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
Ddx55Q6ZPL9 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC28.23■■■□□ 2.11
Ddx55Q6ZPL9 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Ddx55Q6ZPL9 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC28.22■■■□□ 2.11
Ddx55Q6ZPL9 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Ddx55Q6ZPL9 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC28.21■■■□□ 2.11
Ddx55Q6ZPL9 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
Ddx55Q6ZPL9 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Ddx55Q6ZPL9 Gm30023-201ENSMUST00000197970 889 ntBASIC28.19■■■□□ 2.1
Ddx55Q6ZPL9 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Ddx55Q6ZPL9 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Ddx55Q6ZPL9 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Ddx55Q6ZPL9 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
Ddx55Q6ZPL9 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Ddx55Q6ZPL9 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC28.14■■■□□ 2.1
Ddx55Q6ZPL9 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
Ddx55Q6ZPL9 Particl-201ENSMUST00000205370 1560 ntBASIC28.14■■■□□ 2.1
Ddx55Q6ZPL9 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
Ddx55Q6ZPL9 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC28.13■■■□□ 2.09
Ddx55Q6ZPL9 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Ddx55Q6ZPL9 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms