Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
Limch1Q3UH68 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC28.68■■■□□ 2.18
Limch1Q3UH68 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Limch1Q3UH68 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Limch1Q3UH68 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Limch1Q3UH68 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC28.66■■■□□ 2.18
Limch1Q3UH68 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
Limch1Q3UH68 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
Limch1Q3UH68 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
Limch1Q3UH68 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Limch1Q3UH68 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC28.62■■■□□ 2.17
Limch1Q3UH68 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC28.62■■■□□ 2.17
Limch1Q3UH68 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Limch1Q3UH68 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Limch1Q3UH68 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Limch1Q3UH68 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Limch1Q3UH68 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Limch1Q3UH68 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
Limch1Q3UH68 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC28.58■■■□□ 2.17
Limch1Q3UH68 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC28.58■■■□□ 2.17
Limch1Q3UH68 Fezf2-202ENSMUST00000224023 1917 ntBASIC28.57■■■□□ 2.16
Limch1Q3UH68 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Limch1Q3UH68 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Limch1Q3UH68 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Limch1Q3UH68 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC28.55■■■□□ 2.16
Limch1Q3UH68 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Limch1Q3UH68 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Limch1Q3UH68 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Limch1Q3UH68 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC28.54■■■□□ 2.16
Limch1Q3UH68 Gm9939-201ENSMUST00000067161 1154 ntBASIC28.54■■■□□ 2.16
Limch1Q3UH68 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC28.54■■■□□ 2.16
Limch1Q3UH68 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC28.54■■■□□ 2.16
Limch1Q3UH68 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
Limch1Q3UH68 Gm5987-201ENSMUST00000196433 1151 ntBASIC28.53■■■□□ 2.16
Limch1Q3UH68 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
Limch1Q3UH68 Gm43863-201ENSMUST00000203822 1192 ntBASIC28.52■■■□□ 2.16
Limch1Q3UH68 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
Limch1Q3UH68 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Limch1Q3UH68 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
Limch1Q3UH68 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
Limch1Q3UH68 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
Limch1Q3UH68 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Limch1Q3UH68 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Limch1Q3UH68 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Limch1Q3UH68 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Limch1Q3UH68 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
Limch1Q3UH68 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC28.46■■■□□ 2.15
Limch1Q3UH68 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Limch1Q3UH68 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Limch1Q3UH68 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
Limch1Q3UH68 Gm8503-201ENSMUST00000118131 455 ntBASIC28.44■■■□□ 2.14
Limch1Q3UH68 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC28.43■■■□□ 2.14
Limch1Q3UH68 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC28.42■■■□□ 2.14
Limch1Q3UH68 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Limch1Q3UH68 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC28.42■■■□□ 2.14
Limch1Q3UH68 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC28.42■■■□□ 2.14
Limch1Q3UH68 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
Limch1Q3UH68 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Limch1Q3UH68 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC28.4■■■□□ 2.14
Limch1Q3UH68 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Limch1Q3UH68 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
Limch1Q3UH68 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC28.39■■■□□ 2.14
Limch1Q3UH68 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Limch1Q3UH68 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
Limch1Q3UH68 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
Limch1Q3UH68 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
Limch1Q3UH68 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Limch1Q3UH68 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
Limch1Q3UH68 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Limch1Q3UH68 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Limch1Q3UH68 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC28.35■■■□□ 2.13
Limch1Q3UH68 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Limch1Q3UH68 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
Limch1Q3UH68 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Limch1Q3UH68 Gm6821-201ENSMUST00000107540 542 ntBASIC28.34■■■□□ 2.13
Limch1Q3UH68 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Limch1Q3UH68 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC28.32■■■□□ 2.12
Limch1Q3UH68 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
Limch1Q3UH68 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC28.32■■■□□ 2.12
Limch1Q3UH68 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
Limch1Q3UH68 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC28.3■■■□□ 2.12
Limch1Q3UH68 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
Limch1Q3UH68 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
Limch1Q3UH68 AC157572.2-201ENSMUST00000226970 908 ntBASIC28.29■■■□□ 2.12
Limch1Q3UH68 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
Limch1Q3UH68 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Limch1Q3UH68 Pcf11-205ENSMUST00000208255 1720 ntBASIC28.26■■■□□ 2.12
Limch1Q3UH68 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Limch1Q3UH68 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Limch1Q3UH68 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
Limch1Q3UH68 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Limch1Q3UH68 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC28.24■■■□□ 2.11
Limch1Q3UH68 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Limch1Q3UH68 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
Limch1Q3UH68 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC28.23■■■□□ 2.11
Limch1Q3UH68 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC28.23■■■□□ 2.11
Limch1Q3UH68 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC28.23■■■□□ 2.11
Limch1Q3UH68 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Limch1Q3UH68 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC28.22■■■□□ 2.11
Limch1Q3UH68 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms