Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC20.05■□□□□ 0.8
Hmgb3O54879 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Hmgb3O54879 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Hmgb3O54879 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
Hmgb3O54879 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC20.02■□□□□ 0.8
Hmgb3O54879 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Hmgb3O54879 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Hmgb3O54879 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Hmgb3O54879 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
Hmgb3O54879 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Hmgb3O54879 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Hmgb3O54879 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Hmgb3O54879 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Hmgb3O54879 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Hmgb3O54879 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Hmgb3O54879 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Hmgb3O54879 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Hmgb3O54879 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Hmgb3O54879 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Hmgb3O54879 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Hmgb3O54879 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Hmgb3O54879 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Hmgb3O54879 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Hmgb3O54879 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Hmgb3O54879 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Hmgb3O54879 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Hmgb3O54879 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC19.96■□□□□ 0.79
Hmgb3O54879 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Hmgb3O54879 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Hmgb3O54879 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Hmgb3O54879 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Hmgb3O54879 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Hmgb3O54879 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Hmgb3O54879 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Hmgb3O54879 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Hmgb3O54879 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC19.94■□□□□ 0.78
Hmgb3O54879 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Hmgb3O54879 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Hmgb3O54879 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Hmgb3O54879 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Hmgb3O54879 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Hmgb3O54879 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC19.93■□□□□ 0.78
Hmgb3O54879 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Hmgb3O54879 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Hmgb3O54879 AC124392.1-201ENSMUST00000225172 5324 ntBASIC19.92■□□□□ 0.78
Hmgb3O54879 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Hmgb3O54879 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Hmgb3O54879 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Hmgb3O54879 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC19.91■□□□□ 0.78
Hmgb3O54879 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Hmgb3O54879 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Hmgb3O54879 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Hmgb3O54879 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Hmgb3O54879 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Hmgb3O54879 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb3O54879 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Hmgb3O54879 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Hmgb3O54879 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Hmgb3O54879 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Hmgb3O54879 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC19.86■□□□□ 0.77
Hmgb3O54879 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Hmgb3O54879 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC19.86■□□□□ 0.77
Hmgb3O54879 Gm30346-201ENSMUST00000218641 1699 ntBASIC19.86■□□□□ 0.77
Hmgb3O54879 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Hmgb3O54879 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb3O54879 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb3O54879 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb3O54879 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb3O54879 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb3O54879 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Hmgb3O54879 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Hmgb3O54879 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Hmgb3O54879 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Hmgb3O54879 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Hmgb3O54879 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Hmgb3O54879 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Hmgb3O54879 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC19.81■□□□□ 0.76
Hmgb3O54879 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Hmgb3O54879 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hmgb3O54879 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hmgb3O54879 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Hmgb3O54879 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb3O54879 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb3O54879 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb3O54879 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb3O54879 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
Hmgb3O54879 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb3O54879 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
Hmgb3O54879 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb3O54879 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb3O54879 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
Hmgb3O54879 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Hmgb3O54879 AC166822.3-201ENSMUST00000227394 661 ntBASIC19.77■□□□□ 0.76
Hmgb3O54879 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Hmgb3O54879 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC19.77■□□□□ 0.75
Hmgb3O54879 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC19.75■□□□□ 0.75
Hmgb3O54879 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hmgb3O54879 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hmgb3O54879 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hmgb3O54879 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 74.5 ms