Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC21.59■■□□□ 1.05
Pcdhgb8A0A140LI48 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Pcdhgb8A0A140LI48 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Pcdhgb8A0A140LI48 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Pcdhgb8A0A140LI48 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Pcdhgb8A0A140LI48 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
Pcdhgb8A0A140LI48 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
Pcdhgb8A0A140LI48 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Pcdhgb8A0A140LI48 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC21.55■■□□□ 1.04
Pcdhgb8A0A140LI48 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC21.55■■□□□ 1.04
Pcdhgb8A0A140LI48 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Pcdhgb8A0A140LI48 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Pcdhgb8A0A140LI48 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Pcdhgb8A0A140LI48 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Pcdhgb8A0A140LI48 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Pcdhgb8A0A140LI48 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC21.54■■□□□ 1.04
Pcdhgb8A0A140LI48 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC21.54■■□□□ 1.04
Pcdhgb8A0A140LI48 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC21.54■■□□□ 1.04
Pcdhgb8A0A140LI48 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Pcdhgb8A0A140LI48 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Pcdhgb8A0A140LI48 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Pcdhgb8A0A140LI48 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC21.52■■□□□ 1.04
Pcdhgb8A0A140LI48 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Pcdhgb8A0A140LI48 Gm24970-201ENSMUST00000175582 82 ntBASIC21.52■■□□□ 1.04
Pcdhgb8A0A140LI48 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Pcdhgb8A0A140LI48 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC21.51■■□□□ 1.03
Pcdhgb8A0A140LI48 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Pcdhgb8A0A140LI48 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Pcdhgb8A0A140LI48 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Pcdhgb8A0A140LI48 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC21.5■■□□□ 1.03
Pcdhgb8A0A140LI48 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC21.49■■□□□ 1.03
Pcdhgb8A0A140LI48 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
Pcdhgb8A0A140LI48 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Pcdhgb8A0A140LI48 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Pcdhgb8A0A140LI48 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Pcdhgb8A0A140LI48 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdhgb8A0A140LI48 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdhgb8A0A140LI48 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
Pcdhgb8A0A140LI48 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC21.46■■□□□ 1.03
Pcdhgb8A0A140LI48 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdhgb8A0A140LI48 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdhgb8A0A140LI48 Gm6345-201ENSMUST00000180378 1691 ntBASIC21.46■■□□□ 1.03
Pcdhgb8A0A140LI48 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdhgb8A0A140LI48 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Pcdhgb8A0A140LI48 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
Pcdhgb8A0A140LI48 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
Pcdhgb8A0A140LI48 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Pcdhgb8A0A140LI48 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Pcdhgb8A0A140LI48 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Pcdhgb8A0A140LI48 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Pcdhgb8A0A140LI48 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Pcdhgb8A0A140LI48 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Pcdhgb8A0A140LI48 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC21.43■■□□□ 1.02
Pcdhgb8A0A140LI48 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC21.43■■□□□ 1.02
Pcdhgb8A0A140LI48 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
Pcdhgb8A0A140LI48 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Pcdhgb8A0A140LI48 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Pcdhgb8A0A140LI48 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Pcdhgb8A0A140LI48 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
Pcdhgb8A0A140LI48 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Pcdhgb8A0A140LI48 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
Pcdhgb8A0A140LI48 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC21.39■■□□□ 1.02
Pcdhgb8A0A140LI48 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Pcdhgb8A0A140LI48 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
Pcdhgb8A0A140LI48 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Pcdhgb8A0A140LI48 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Pcdhgb8A0A140LI48 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Pcdhgb8A0A140LI48 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Pcdhgb8A0A140LI48 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
Pcdhgb8A0A140LI48 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Pcdhgb8A0A140LI48 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Pcdhgb8A0A140LI48 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdhgb8A0A140LI48 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
Pcdhgb8A0A140LI48 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdhgb8A0A140LI48 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdhgb8A0A140LI48 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Pcdhgb8A0A140LI48 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Pcdhgb8A0A140LI48 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Pcdhgb8A0A140LI48 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Pcdhgb8A0A140LI48 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Pcdhgb8A0A140LI48 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Pcdhgb8A0A140LI48 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
Pcdhgb8A0A140LI48 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Pcdhgb8A0A140LI48 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Pcdhgb8A0A140LI48 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Pcdhgb8A0A140LI48 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Pcdhgb8A0A140LI48 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
Pcdhgb8A0A140LI48 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Pcdhgb8A0A140LI48 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC21.31■■□□□ 1
Pcdhgb8A0A140LI48 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
Pcdhgb8A0A140LI48 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC21.31■■□□□ 1
Pcdhgb8A0A140LI48 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC21.3■■□□□ 1
Pcdhgb8A0A140LI48 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC21.3■■□□□ 1
Pcdhgb8A0A140LI48 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC21.29■■□□□ 1
Pcdhgb8A0A140LI48 Gm43863-201ENSMUST00000203822 1192 ntBASIC21.29■■□□□ 1
Pcdhgb8A0A140LI48 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC21.28■■□□□ 1
Pcdhgb8A0A140LI48 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Pcdhgb8A0A140LI48 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Pcdhgb8A0A140LI48 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC21.27■■□□□ 1
Pcdhgb8A0A140LI48 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 58.1 ms