Protein–RNA interactions for Protein: Q9JKE1

Trem3, TREM-3, mousemouse

Predictions only

Length 183 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem3Q9JKE1 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trem3Q9JKE1 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trem3Q9JKE1 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Gm22325-201ENSMUST00000158904 308 ntBASIC14.42□□□□□ -0.1
Trem3Q9JKE1 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trem3Q9JKE1 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Gm15635-204ENSMUST00000208024 2539 ntBASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Trem3Q9JKE1 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trem3Q9JKE1 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Trem3Q9JKE1 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Trem3Q9JKE1 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trem3Q9JKE1 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trem3Q9JKE1 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trem3Q9JKE1 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC14.4□□□□□ -0.1
Trem3Q9JKE1 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Trem3Q9JKE1 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trem3Q9JKE1 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trem3Q9JKE1 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trem3Q9JKE1 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trem3Q9JKE1 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trem3Q9JKE1 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trem3Q9JKE1 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trem3Q9JKE1 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trem3Q9JKE1 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Trem3Q9JKE1 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trem3Q9JKE1 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trem3Q9JKE1 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trem3Q9JKE1 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trem3Q9JKE1 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
Trem3Q9JKE1 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
Trem3Q9JKE1 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
Trem3Q9JKE1 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Trem3Q9JKE1 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trem3Q9JKE1 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trem3Q9JKE1 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Trem3Q9JKE1 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Trem3Q9JKE1 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trem3Q9JKE1 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trem3Q9JKE1 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Gm43672-201ENSMUST00000199072 1731 ntBASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Gm2011-201ENSMUST00000203124 1263 ntBASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trem3Q9JKE1 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trem3Q9JKE1 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms