Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC19.27■□□□□ 0.68
Trim54Q9ERP3 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim54Q9ERP3 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC19.27■□□□□ 0.68
Trim54Q9ERP3 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC19.27■□□□□ 0.68
Trim54Q9ERP3 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim54Q9ERP3 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Trim54Q9ERP3 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trim54Q9ERP3 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim54Q9ERP3 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim54Q9ERP3 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim54Q9ERP3 AC121961.1-201ENSMUST00000218594 1779 ntBASIC19.27■□□□□ 0.67
Trim54Q9ERP3 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Gm38308-201ENSMUST00000194934 1809 ntBASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Gm7889-201ENSMUST00000185591 958 ntBASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim54Q9ERP3 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim54Q9ERP3 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trim54Q9ERP3 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim54Q9ERP3 Gm12085-201ENSMUST00000119263 940 ntBASIC19.25■□□□□ 0.67
Trim54Q9ERP3 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC19.25■□□□□ 0.67
Trim54Q9ERP3 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Trim54Q9ERP3 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim54Q9ERP3 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim54Q9ERP3 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim54Q9ERP3 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim54Q9ERP3 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim54Q9ERP3 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim54Q9ERP3 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trim54Q9ERP3 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trim54Q9ERP3 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim54Q9ERP3 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim54Q9ERP3 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC19.24■□□□□ 0.67
Trim54Q9ERP3 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim54Q9ERP3 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Trim54Q9ERP3 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Trim54Q9ERP3 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim54Q9ERP3 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim54Q9ERP3 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim54Q9ERP3 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC19.24■□□□□ 0.67
Trim54Q9ERP3 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim54Q9ERP3 Gm10517-202ENSMUST00000192970 758 ntBASIC19.24■□□□□ 0.67
Trim54Q9ERP3 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC19.24■□□□□ 0.67
Trim54Q9ERP3 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim54Q9ERP3 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim54Q9ERP3 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
Trim54Q9ERP3 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim54Q9ERP3 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim54Q9ERP3 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim54Q9ERP3 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim54Q9ERP3 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim54Q9ERP3 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Trim54Q9ERP3 AC108858.1-201ENSMUST00000228461 1498 ntBASIC19.23■□□□□ 0.67
Trim54Q9ERP3 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trim54Q9ERP3 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim54Q9ERP3 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC19.23■□□□□ 0.67
Trim54Q9ERP3 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim54Q9ERP3 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim54Q9ERP3 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim54Q9ERP3 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trim54Q9ERP3 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim54Q9ERP3 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim54Q9ERP3 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Trim54Q9ERP3 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim54Q9ERP3 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim54Q9ERP3 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim54Q9ERP3 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim54Q9ERP3 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC19.22■□□□□ 0.67
Trim54Q9ERP3 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC19.22■□□□□ 0.67
Trim54Q9ERP3 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Trim54Q9ERP3 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim54Q9ERP3 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC19.22■□□□□ 0.67
Trim54Q9ERP3 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC19.22■□□□□ 0.67
Trim54Q9ERP3 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim54Q9ERP3 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim54Q9ERP3 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim54Q9ERP3 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC19.22■□□□□ 0.67
Trim54Q9ERP3 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim54Q9ERP3 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim54Q9ERP3 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC19.22■□□□□ 0.67
Trim54Q9ERP3 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC19.22■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms