Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vps28Q9D1C8 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vps28Q9D1C8 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Vps28Q9D1C8 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vps28Q9D1C8 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vps28Q9D1C8 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vps28Q9D1C8 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC18.24■□□□□ 0.51
Vps28Q9D1C8 Gm10698-201ENSMUST00000182663 604 ntBASIC18.24■□□□□ 0.51
Vps28Q9D1C8 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vps28Q9D1C8 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vps28Q9D1C8 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
Vps28Q9D1C8 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vps28Q9D1C8 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vps28Q9D1C8 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vps28Q9D1C8 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Vps28Q9D1C8 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vps28Q9D1C8 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
Vps28Q9D1C8 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vps28Q9D1C8 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps28Q9D1C8 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps28Q9D1C8 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps28Q9D1C8 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
Vps28Q9D1C8 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Vps28Q9D1C8 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps28Q9D1C8 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Vps28Q9D1C8 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Vps28Q9D1C8 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC18.23■□□□□ 0.51
Vps28Q9D1C8 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps28Q9D1C8 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps28Q9D1C8 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Vps28Q9D1C8 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps28Q9D1C8 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps28Q9D1C8 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps28Q9D1C8 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps28Q9D1C8 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Vps28Q9D1C8 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Vps28Q9D1C8 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vps28Q9D1C8 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Vps28Q9D1C8 AC123834.2-201ENSMUST00000224038 2340 ntBASIC18.22■□□□□ 0.51
Vps28Q9D1C8 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vps28Q9D1C8 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vps28Q9D1C8 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vps28Q9D1C8 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Vps28Q9D1C8 Gm15375-201ENSMUST00000119510 849 ntBASIC18.22■□□□□ 0.51
Vps28Q9D1C8 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vps28Q9D1C8 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC18.22■□□□□ 0.51
Vps28Q9D1C8 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Vps28Q9D1C8 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Vps28Q9D1C8 Gm43213-201ENSMUST00000151866 1790 ntBASIC18.22■□□□□ 0.51
Vps28Q9D1C8 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC18.21■□□□□ 0.51
Vps28Q9D1C8 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps28Q9D1C8 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
Vps28Q9D1C8 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps28Q9D1C8 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Vps28Q9D1C8 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC18.21■□□□□ 0.51
Vps28Q9D1C8 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Vps28Q9D1C8 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC18.21■□□□□ 0.51
Vps28Q9D1C8 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps28Q9D1C8 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps28Q9D1C8 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps28Q9D1C8 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps28Q9D1C8 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
Vps28Q9D1C8 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps28Q9D1C8 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps28Q9D1C8 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps28Q9D1C8 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps28Q9D1C8 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Vps28Q9D1C8 Gm19439-201ENSMUST00000198195 2273 ntBASIC18.2■□□□□ 0.5
Vps28Q9D1C8 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Vps28Q9D1C8 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps28Q9D1C8 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps28Q9D1C8 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps28Q9D1C8 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Vps28Q9D1C8 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC18.2■□□□□ 0.5
Vps28Q9D1C8 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps28Q9D1C8 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps28Q9D1C8 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps28Q9D1C8 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
Vps28Q9D1C8 Dmtn-207ENSMUST00000228001 2437 ntBASIC18.2■□□□□ 0.5
Vps28Q9D1C8 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps28Q9D1C8 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Vps28Q9D1C8 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps28Q9D1C8 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Vps28Q9D1C8 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Vps28Q9D1C8 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Vps28Q9D1C8 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC18.19■□□□□ 0.5
Vps28Q9D1C8 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Vps28Q9D1C8 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC18.19■□□□□ 0.5
Vps28Q9D1C8 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps28Q9D1C8 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps28Q9D1C8 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps28Q9D1C8 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Vps28Q9D1C8 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Vps28Q9D1C8 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Vps28Q9D1C8 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps28Q9D1C8 Gm45560-201ENSMUST00000211492 1472 ntBASIC18.19■□□□□ 0.5
Vps28Q9D1C8 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps28Q9D1C8 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Vps28Q9D1C8 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Vps28Q9D1C8 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms