Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC16.66■□□□□ 0.26
Ddx28Q9CWT6 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx28Q9CWT6 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx28Q9CWT6 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx28Q9CWT6 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC16.66■□□□□ 0.26
Ddx28Q9CWT6 Gm10033-202ENSMUST00000211874 928 ntBASIC16.66■□□□□ 0.26
Ddx28Q9CWT6 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC16.66■□□□□ 0.26
Ddx28Q9CWT6 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx28Q9CWT6 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx28Q9CWT6 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
Ddx28Q9CWT6 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx28Q9CWT6 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx28Q9CWT6 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Ddx28Q9CWT6 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx28Q9CWT6 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx28Q9CWT6 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC16.65■□□□□ 0.26
Ddx28Q9CWT6 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx28Q9CWT6 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx28Q9CWT6 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx28Q9CWT6 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx28Q9CWT6 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Ddx28Q9CWT6 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx28Q9CWT6 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Ddx28Q9CWT6 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Ddx28Q9CWT6 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx28Q9CWT6 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx28Q9CWT6 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Ddx28Q9CWT6 Gm10655-201ENSMUST00000098658 1397 ntBASIC16.64■□□□□ 0.26
Ddx28Q9CWT6 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx28Q9CWT6 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx28Q9CWT6 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx28Q9CWT6 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx28Q9CWT6 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx28Q9CWT6 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC16.64■□□□□ 0.25
Ddx28Q9CWT6 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx28Q9CWT6 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC16.64■□□□□ 0.25
Ddx28Q9CWT6 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC16.64■□□□□ 0.25
Ddx28Q9CWT6 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC16.64■□□□□ 0.25
Ddx28Q9CWT6 Gm42569-201ENSMUST00000200539 472 ntBASIC16.64■□□□□ 0.25
Ddx28Q9CWT6 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx28Q9CWT6 Gm10167-201ENSMUST00000150411 1479 ntBASIC16.64■□□□□ 0.25
Ddx28Q9CWT6 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx28Q9CWT6 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx28Q9CWT6 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx28Q9CWT6 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx28Q9CWT6 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC16.64■□□□□ 0.25
Ddx28Q9CWT6 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx28Q9CWT6 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx28Q9CWT6 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ddx28Q9CWT6 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ddx28Q9CWT6 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
Ddx28Q9CWT6 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ddx28Q9CWT6 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ddx28Q9CWT6 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Ddx28Q9CWT6 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Ddx28Q9CWT6 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ddx28Q9CWT6 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC16.63■□□□□ 0.25
Ddx28Q9CWT6 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
Ddx28Q9CWT6 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ddx28Q9CWT6 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ddx28Q9CWT6 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Ddx28Q9CWT6 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Ddx28Q9CWT6 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ddx28Q9CWT6 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ddx28Q9CWT6 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC16.63■□□□□ 0.25
Ddx28Q9CWT6 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ddx28Q9CWT6 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ddx28Q9CWT6 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Ddx28Q9CWT6 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Ddx28Q9CWT6 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Ddx28Q9CWT6 Gm7292-201ENSMUST00000194706 2527 ntBASIC16.62■□□□□ 0.25
Ddx28Q9CWT6 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ddx28Q9CWT6 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ddx28Q9CWT6 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Ddx28Q9CWT6 Slc35b2-207ENSMUST00000226086 850 ntBASIC16.62■□□□□ 0.25
Ddx28Q9CWT6 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Ddx28Q9CWT6 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Ddx28Q9CWT6 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ddx28Q9CWT6 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ddx28Q9CWT6 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ddx28Q9CWT6 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ddx28Q9CWT6 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ddx28Q9CWT6 Gm45906-201ENSMUST00000208911 1430 ntBASIC16.62■□□□□ 0.25
Ddx28Q9CWT6 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC16.61■□□□□ 0.25
Ddx28Q9CWT6 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx28Q9CWT6 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx28Q9CWT6 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx28Q9CWT6 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx28Q9CWT6 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
Ddx28Q9CWT6 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx28Q9CWT6 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx28Q9CWT6 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx28Q9CWT6 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC16.61■□□□□ 0.25
Ddx28Q9CWT6 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC16.61■□□□□ 0.25
Ddx28Q9CWT6 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC16.61■□□□□ 0.25
Ddx28Q9CWT6 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx28Q9CWT6 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx28Q9CWT6 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx28Q9CWT6 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx28Q9CWT6 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms