Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lsm1Q8VC85 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lsm1Q8VC85 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lsm1Q8VC85 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lsm1Q8VC85 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lsm1Q8VC85 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lsm1Q8VC85 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Lsm1Q8VC85 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lsm1Q8VC85 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lsm1Q8VC85 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC17.06■□□□□ 0.32
Lsm1Q8VC85 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
Lsm1Q8VC85 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lsm1Q8VC85 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lsm1Q8VC85 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lsm1Q8VC85 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Lsm1Q8VC85 Gm42555-201ENSMUST00000199304 1039 ntBASIC17.06■□□□□ 0.32
Lsm1Q8VC85 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Lsm1Q8VC85 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Lsm1Q8VC85 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lsm1Q8VC85 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lsm1Q8VC85 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lsm1Q8VC85 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lsm1Q8VC85 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC17.06■□□□□ 0.32
Lsm1Q8VC85 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC17.06■□□□□ 0.32
Lsm1Q8VC85 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Lsm1Q8VC85 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Lsm1Q8VC85 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Lsm1Q8VC85 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC17.05■□□□□ 0.32
Lsm1Q8VC85 Gm7290-201ENSMUST00000104990 617 ntBASIC17.05■□□□□ 0.32
Lsm1Q8VC85 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lsm1Q8VC85 Gm12918-201ENSMUST00000120234 636 ntBASIC17.05■□□□□ 0.32
Lsm1Q8VC85 Gm15710-201ENSMUST00000121821 636 ntBASIC17.05■□□□□ 0.32
Lsm1Q8VC85 Gm6211-202ENSMUST00000167849 925 ntBASIC17.05■□□□□ 0.32
Lsm1Q8VC85 Gm5075-201ENSMUST00000196916 622 ntBASIC17.05■□□□□ 0.32
Lsm1Q8VC85 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lsm1Q8VC85 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC17.05■□□□□ 0.32
Lsm1Q8VC85 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC17.05■□□□□ 0.32
Lsm1Q8VC85 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Lsm1Q8VC85 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lsm1Q8VC85 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Lsm1Q8VC85 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lsm1Q8VC85 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lsm1Q8VC85 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lsm1Q8VC85 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lsm1Q8VC85 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lsm1Q8VC85 AC121598.2-201ENSMUST00000228376 2325 ntBASIC17.04■□□□□ 0.32
Lsm1Q8VC85 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
Lsm1Q8VC85 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Lsm1Q8VC85 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lsm1Q8VC85 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lsm1Q8VC85 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lsm1Q8VC85 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lsm1Q8VC85 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Lsm1Q8VC85 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lsm1Q8VC85 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Lsm1Q8VC85 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
Lsm1Q8VC85 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lsm1Q8VC85 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC17.04■□□□□ 0.32
Lsm1Q8VC85 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Lsm1Q8VC85 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lsm1Q8VC85 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Gm38285-201ENSMUST00000192928 922 ntBASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.03■□□□□ 0.32
Lsm1Q8VC85 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lsm1Q8VC85 Gm15635-204ENSMUST00000208024 2539 ntBASIC17.02■□□□□ 0.32
Lsm1Q8VC85 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lsm1Q8VC85 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lsm1Q8VC85 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lsm1Q8VC85 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lsm1Q8VC85 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Lsm1Q8VC85 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lsm1Q8VC85 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lsm1Q8VC85 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Lsm1Q8VC85 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Lsm1Q8VC85 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
Lsm1Q8VC85 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC17.02■□□□□ 0.31
Lsm1Q8VC85 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Lsm1Q8VC85 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lsm1Q8VC85 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lsm1Q8VC85 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lsm1Q8VC85 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms