Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ushbp1Q8R370 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ushbp1Q8R370 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC19.96■□□□□ 0.79
Ushbp1Q8R370 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Ushbp1Q8R370 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC19.96■□□□□ 0.79
Ushbp1Q8R370 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ushbp1Q8R370 Gm37374-201ENSMUST00000194954 1829 ntBASIC19.96■□□□□ 0.79
Ushbp1Q8R370 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
Ushbp1Q8R370 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ushbp1Q8R370 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ushbp1Q8R370 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC19.95■□□□□ 0.79
Ushbp1Q8R370 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ushbp1Q8R370 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ushbp1Q8R370 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ushbp1Q8R370 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Ushbp1Q8R370 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC19.95■□□□□ 0.78
Ushbp1Q8R370 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ushbp1Q8R370 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC19.95■□□□□ 0.78
Ushbp1Q8R370 AC140264.2-202ENSMUST00000218746 817 ntBASIC19.95■□□□□ 0.78
Ushbp1Q8R370 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ushbp1Q8R370 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ushbp1Q8R370 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ushbp1Q8R370 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ushbp1Q8R370 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Ushbp1Q8R370 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC19.94■□□□□ 0.78
Ushbp1Q8R370 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ushbp1Q8R370 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ushbp1Q8R370 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ushbp1Q8R370 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ushbp1Q8R370 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC19.94■□□□□ 0.78
Ushbp1Q8R370 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ushbp1Q8R370 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ushbp1Q8R370 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ushbp1Q8R370 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ushbp1Q8R370 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ushbp1Q8R370 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ushbp1Q8R370 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ushbp1Q8R370 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ushbp1Q8R370 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ushbp1Q8R370 Gm44544-201ENSMUST00000207052 1844 ntBASIC19.93■□□□□ 0.78
Ushbp1Q8R370 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ushbp1Q8R370 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ushbp1Q8R370 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC19.93■□□□□ 0.78
Ushbp1Q8R370 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Ushbp1Q8R370 AC154649.1-201ENSMUST00000227392 384 ntBASIC19.93■□□□□ 0.78
Ushbp1Q8R370 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ushbp1Q8R370 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ushbp1Q8R370 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Ushbp1Q8R370 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ushbp1Q8R370 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC19.93■□□□□ 0.78
Ushbp1Q8R370 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Ushbp1Q8R370 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Ushbp1Q8R370 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ushbp1Q8R370 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ushbp1Q8R370 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ushbp1Q8R370 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ushbp1Q8R370 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Ushbp1Q8R370 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Ushbp1Q8R370 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ushbp1Q8R370 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Ushbp1Q8R370 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ushbp1Q8R370 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ushbp1Q8R370 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ushbp1Q8R370 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Ushbp1Q8R370 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
Ushbp1Q8R370 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ushbp1Q8R370 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Ushbp1Q8R370 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Ushbp1Q8R370 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ushbp1Q8R370 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Ushbp1Q8R370 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Ushbp1Q8R370 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC19.91■□□□□ 0.78
Ushbp1Q8R370 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC19.91■□□□□ 0.78
Ushbp1Q8R370 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ushbp1Q8R370 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC19.91■□□□□ 0.78
Ushbp1Q8R370 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ushbp1Q8R370 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Ushbp1Q8R370 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Ushbp1Q8R370 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC19.91■□□□□ 0.78
Ushbp1Q8R370 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Ushbp1Q8R370 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ushbp1Q8R370 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Ushbp1Q8R370 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ushbp1Q8R370 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ushbp1Q8R370 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ushbp1Q8R370 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Ushbp1Q8R370 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ushbp1Q8R370 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ushbp1Q8R370 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Ushbp1Q8R370 Gm11249-201ENSMUST00000117071 859 ntBASIC19.9■□□□□ 0.78
Ushbp1Q8R370 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Ushbp1Q8R370 Gm15565-201ENSMUST00000118890 427 ntBASIC19.9■□□□□ 0.78
Ushbp1Q8R370 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ushbp1Q8R370 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Ushbp1Q8R370 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Ushbp1Q8R370 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ushbp1Q8R370 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ushbp1Q8R370 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
Ushbp1Q8R370 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ushbp1Q8R370 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 11.8 ms