Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Nup88Q8CEC0 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Nup88Q8CEC0 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC21.01■□□□□ 0.95
Nup88Q8CEC0 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Nup88Q8CEC0 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC21.01■□□□□ 0.95
Nup88Q8CEC0 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Nup88Q8CEC0 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Nup88Q8CEC0 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Nup88Q8CEC0 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Nup88Q8CEC0 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Nup88Q8CEC0 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Nup88Q8CEC0 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Nup88Q8CEC0 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
Nup88Q8CEC0 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Nup88Q8CEC0 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC21■□□□□ 0.95
Nup88Q8CEC0 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC21■□□□□ 0.95
Nup88Q8CEC0 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC21■□□□□ 0.95
Nup88Q8CEC0 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Nup88Q8CEC0 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Nup88Q8CEC0 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC21■□□□□ 0.95
Nup88Q8CEC0 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Nup88Q8CEC0 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC21■□□□□ 0.95
Nup88Q8CEC0 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC21■□□□□ 0.95
Nup88Q8CEC0 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC21■□□□□ 0.95
Nup88Q8CEC0 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Nup88Q8CEC0 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Nup88Q8CEC0 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Nup88Q8CEC0 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Nup88Q8CEC0 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Nup88Q8CEC0 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
Nup88Q8CEC0 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC20.99■□□□□ 0.95
Nup88Q8CEC0 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Nup88Q8CEC0 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC20.99■□□□□ 0.95
Nup88Q8CEC0 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC20.99■□□□□ 0.95
Nup88Q8CEC0 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Nup88Q8CEC0 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Nup88Q8CEC0 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Nup88Q8CEC0 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Nup88Q8CEC0 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC20.99■□□□□ 0.95
Nup88Q8CEC0 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Nup88Q8CEC0 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
Nup88Q8CEC0 AC121961.1-201ENSMUST00000218594 1779 ntBASIC20.98■□□□□ 0.95
Nup88Q8CEC0 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Nup88Q8CEC0 Dio3-201ENSMUST00000097228 1449 ntBASIC20.98■□□□□ 0.95
Nup88Q8CEC0 Gm5643-201ENSMUST00000117081 966 ntBASIC20.98■□□□□ 0.95
Nup88Q8CEC0 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Nup88Q8CEC0 AC107452.1-201ENSMUST00000227963 481 ntBASIC20.98■□□□□ 0.95
Nup88Q8CEC0 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Nup88Q8CEC0 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Nup88Q8CEC0 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Nup88Q8CEC0 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Nup88Q8CEC0 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Nup88Q8CEC0 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Nup88Q8CEC0 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Nup88Q8CEC0 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
Nup88Q8CEC0 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Nup88Q8CEC0 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Nup88Q8CEC0 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Nup88Q8CEC0 Gm2559-201ENSMUST00000201323 363 ntBASIC20.97■□□□□ 0.95
Nup88Q8CEC0 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC20.97■□□□□ 0.95
Nup88Q8CEC0 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC20.97■□□□□ 0.95
Nup88Q8CEC0 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Nup88Q8CEC0 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Nup88Q8CEC0 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Nup88Q8CEC0 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Nup88Q8CEC0 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Nup88Q8CEC0 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Nup88Q8CEC0 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Nup88Q8CEC0 Fcho2-208ENSMUST00000224992 2964 ntBASIC20.96■□□□□ 0.95
Nup88Q8CEC0 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Nup88Q8CEC0 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Nup88Q8CEC0 Gm13181-201ENSMUST00000120117 1069 ntBASIC20.96■□□□□ 0.95
Nup88Q8CEC0 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC20.96■□□□□ 0.95
Nup88Q8CEC0 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Nup88Q8CEC0 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Nup88Q8CEC0 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Nup88Q8CEC0 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Nup88Q8CEC0 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Nup88Q8CEC0 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Nup88Q8CEC0 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Nup88Q8CEC0 Zcchc6-207ENSMUST00000225576 2499 ntBASIC20.96■□□□□ 0.95
Nup88Q8CEC0 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Nup88Q8CEC0 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Nup88Q8CEC0 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Nup88Q8CEC0 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC20.95■□□□□ 0.94
Nup88Q8CEC0 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Nup88Q8CEC0 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC20.95■□□□□ 0.94
Nup88Q8CEC0 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC20.95■□□□□ 0.94
Nup88Q8CEC0 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Nup88Q8CEC0 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Nup88Q8CEC0 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Nup88Q8CEC0 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Nup88Q8CEC0 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Nup88Q8CEC0 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Nup88Q8CEC0 Gm44549-201ENSMUST00000208351 577 ntBASIC20.94■□□□□ 0.94
Nup88Q8CEC0 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Nup88Q8CEC0 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC20.94■□□□□ 0.94
Nup88Q8CEC0 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Nup88Q8CEC0 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Nup88Q8CEC0 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 56.4 ms