Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Trim47Q8C0E3 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC19.74■□□□□ 0.75
Trim47Q8C0E3 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC19.74■□□□□ 0.75
Trim47Q8C0E3 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim47Q8C0E3 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim47Q8C0E3 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Trim47Q8C0E3 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim47Q8C0E3 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Mir6982-201ENSMUST00000184354 68 ntBASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Gm9484-201ENSMUST00000195892 1159 ntBASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim47Q8C0E3 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim47Q8C0E3 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim47Q8C0E3 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC19.72■□□□□ 0.75
Trim47Q8C0E3 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Trim47Q8C0E3 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim47Q8C0E3 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC19.72■□□□□ 0.75
Trim47Q8C0E3 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim47Q8C0E3 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim47Q8C0E3 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim47Q8C0E3 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim47Q8C0E3 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim47Q8C0E3 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trim47Q8C0E3 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Trim47Q8C0E3 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
Trim47Q8C0E3 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Trim47Q8C0E3 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC19.71■□□□□ 0.75
Trim47Q8C0E3 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim47Q8C0E3 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim47Q8C0E3 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim47Q8C0E3 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim47Q8C0E3 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim47Q8C0E3 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Trim47Q8C0E3 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim47Q8C0E3 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trim47Q8C0E3 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim47Q8C0E3 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC19.71■□□□□ 0.75
Trim47Q8C0E3 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim47Q8C0E3 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim47Q8C0E3 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim47Q8C0E3 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim47Q8C0E3 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim47Q8C0E3 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim47Q8C0E3 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim47Q8C0E3 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim47Q8C0E3 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim47Q8C0E3 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
Trim47Q8C0E3 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC19.7■□□□□ 0.74
Trim47Q8C0E3 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim47Q8C0E3 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim47Q8C0E3 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC19.7■□□□□ 0.74
Trim47Q8C0E3 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim47Q8C0E3 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim47Q8C0E3 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim47Q8C0E3 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC19.7■□□□□ 0.74
Trim47Q8C0E3 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim47Q8C0E3 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim47Q8C0E3 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim47Q8C0E3 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim47Q8C0E3 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim47Q8C0E3 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim47Q8C0E3 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim47Q8C0E3 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim47Q8C0E3 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim47Q8C0E3 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim47Q8C0E3 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim47Q8C0E3 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim47Q8C0E3 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim47Q8C0E3 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim47Q8C0E3 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim47Q8C0E3 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Trim47Q8C0E3 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim47Q8C0E3 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim47Q8C0E3 Gm7712-202ENSMUST00000222331 1510 ntBASIC19.69■□□□□ 0.74
Trim47Q8C0E3 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim47Q8C0E3 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim47Q8C0E3 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim47Q8C0E3 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim47Q8C0E3 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
Trim47Q8C0E3 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim47Q8C0E3 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim47Q8C0E3 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim47Q8C0E3 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms