Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ccdc40Q8BI79 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ccdc40Q8BI79 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Ccdc40Q8BI79 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ccdc40Q8BI79 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ccdc40Q8BI79 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Ccdc40Q8BI79 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC18.55■□□□□ 0.56
Ccdc40Q8BI79 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Ccdc40Q8BI79 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Ccdc40Q8BI79 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ccdc40Q8BI79 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ccdc40Q8BI79 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ccdc40Q8BI79 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Ccdc40Q8BI79 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ccdc40Q8BI79 Gm13509-201ENSMUST00000119733 1308 ntBASIC18.54■□□□□ 0.56
Ccdc40Q8BI79 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ccdc40Q8BI79 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Ccdc40Q8BI79 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Ccdc40Q8BI79 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Ccdc40Q8BI79 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Ccdc40Q8BI79 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ccdc40Q8BI79 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ccdc40Q8BI79 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ccdc40Q8BI79 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ccdc40Q8BI79 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
Ccdc40Q8BI79 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ccdc40Q8BI79 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ccdc40Q8BI79 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ccdc40Q8BI79 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Ccdc40Q8BI79 AC123834.2-201ENSMUST00000224038 2340 ntBASIC18.53■□□□□ 0.56
Ccdc40Q8BI79 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ccdc40Q8BI79 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ccdc40Q8BI79 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Ccdc40Q8BI79 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ccdc40Q8BI79 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ccdc40Q8BI79 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Ccdc40Q8BI79 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Ccdc40Q8BI79 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ccdc40Q8BI79 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ccdc40Q8BI79 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ccdc40Q8BI79 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc40Q8BI79 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc40Q8BI79 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc40Q8BI79 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc40Q8BI79 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
Ccdc40Q8BI79 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc40Q8BI79 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc40Q8BI79 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Ccdc40Q8BI79 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Ccdc40Q8BI79 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc40Q8BI79 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc40Q8BI79 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc40Q8BI79 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ccdc40Q8BI79 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ccdc40Q8BI79 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Ccdc40Q8BI79 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc40Q8BI79 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Ccdc40Q8BI79 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc40Q8BI79 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc40Q8BI79 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc40Q8BI79 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC18.51■□□□□ 0.55
Ccdc40Q8BI79 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc40Q8BI79 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Ccdc40Q8BI79 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC18.51■□□□□ 0.55
Ccdc40Q8BI79 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc40Q8BI79 Gm7291-201ENSMUST00000199147 382 ntBASIC18.51■□□□□ 0.55
Ccdc40Q8BI79 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc40Q8BI79 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc40Q8BI79 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc40Q8BI79 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc40Q8BI79 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc40Q8BI79 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Ccdc40Q8BI79 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc40Q8BI79 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc40Q8BI79 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc40Q8BI79 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Ccdc40Q8BI79 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc40Q8BI79 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc40Q8BI79 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc40Q8BI79 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC18.5■□□□□ 0.55
Ccdc40Q8BI79 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc40Q8BI79 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
Ccdc40Q8BI79 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc40Q8BI79 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC18.5■□□□□ 0.55
Ccdc40Q8BI79 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc40Q8BI79 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc40Q8BI79 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc40Q8BI79 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc40Q8BI79 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc40Q8BI79 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc40Q8BI79 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc40Q8BI79 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc40Q8BI79 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc40Q8BI79 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC18.49■□□□□ 0.55
Ccdc40Q8BI79 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Ccdc40Q8BI79 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc40Q8BI79 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc40Q8BI79 Dmtn-210ENSMUST00000228824 2377 ntBASIC18.49■□□□□ 0.55
Ccdc40Q8BI79 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Ccdc40Q8BI79 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms