Protein–RNA interactions for Protein: Q6IFX4

Krt39, Keratin, type I cytoskeletal 39, mousemouse

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Krt39Q6IFX4 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
Krt39Q6IFX4 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Krt39Q6IFX4 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Krt39Q6IFX4 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Krt39Q6IFX4 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
Krt39Q6IFX4 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Krt39Q6IFX4 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Krt39Q6IFX4 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Krt39Q6IFX4 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Krt39Q6IFX4 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Krt39Q6IFX4 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Krt39Q6IFX4 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC19.68■□□□□ 0.74
Krt39Q6IFX4 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC19.68■□□□□ 0.74
Krt39Q6IFX4 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Krt39Q6IFX4 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Krt39Q6IFX4 Gm37519-201ENSMUST00000191687 2210 ntBASIC19.68■□□□□ 0.74
Krt39Q6IFX4 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Krt39Q6IFX4 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Krt39Q6IFX4 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Krt39Q6IFX4 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Krt39Q6IFX4 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Krt39Q6IFX4 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
Krt39Q6IFX4 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Krt39Q6IFX4 Gm7292-201ENSMUST00000194706 2527 ntBASIC19.67■□□□□ 0.74
Krt39Q6IFX4 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC19.67■□□□□ 0.74
Krt39Q6IFX4 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC19.67■□□□□ 0.74
Krt39Q6IFX4 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Krt39Q6IFX4 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC19.67■□□□□ 0.74
Krt39Q6IFX4 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC19.67■□□□□ 0.74
Krt39Q6IFX4 Gm7514-201ENSMUST00000209475 934 ntBASIC19.67■□□□□ 0.74
Krt39Q6IFX4 Slc35b2-207ENSMUST00000226086 850 ntBASIC19.67■□□□□ 0.74
Krt39Q6IFX4 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Krt39Q6IFX4 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Krt39Q6IFX4 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Krt39Q6IFX4 Gm44544-201ENSMUST00000207052 1844 ntBASIC19.67■□□□□ 0.74
Krt39Q6IFX4 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
Krt39Q6IFX4 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Krt39Q6IFX4 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC19.66■□□□□ 0.74
Krt39Q6IFX4 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Krt39Q6IFX4 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Krt39Q6IFX4 Gm10849-201ENSMUST00000100397 618 ntBASIC19.66■□□□□ 0.74
Krt39Q6IFX4 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Krt39Q6IFX4 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Krt39Q6IFX4 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC19.66■□□□□ 0.74
Krt39Q6IFX4 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Krt39Q6IFX4 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC19.66■□□□□ 0.74
Krt39Q6IFX4 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC19.66■□□□□ 0.74
Krt39Q6IFX4 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Krt39Q6IFX4 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Krt39Q6IFX4 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Krt39Q6IFX4 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
Krt39Q6IFX4 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Krt39Q6IFX4 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Krt39Q6IFX4 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Krt39Q6IFX4 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Krt39Q6IFX4 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Krt39Q6IFX4 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Krt39Q6IFX4 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
Krt39Q6IFX4 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Krt39Q6IFX4 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Krt39Q6IFX4 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC19.65■□□□□ 0.74
Krt39Q6IFX4 Gm27405-201ENSMUST00000184201 112 ntBASIC19.65■□□□□ 0.74
Krt39Q6IFX4 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Krt39Q6IFX4 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC19.65■□□□□ 0.74
Krt39Q6IFX4 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Krt39Q6IFX4 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Krt39Q6IFX4 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Krt39Q6IFX4 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC19.65■□□□□ 0.74
Krt39Q6IFX4 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Krt39Q6IFX4 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Krt39Q6IFX4 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Krt39Q6IFX4 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Krt39Q6IFX4 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
Krt39Q6IFX4 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Krt39Q6IFX4 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Krt39Q6IFX4 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Krt39Q6IFX4 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Krt39Q6IFX4 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Krt39Q6IFX4 Gm7291-201ENSMUST00000199147 382 ntBASIC19.64■□□□□ 0.73
Krt39Q6IFX4 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.64■□□□□ 0.73
Krt39Q6IFX4 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Krt39Q6IFX4 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Krt39Q6IFX4 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Krt39Q6IFX4 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Krt39Q6IFX4 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Krt39Q6IFX4 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Krt39Q6IFX4 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Krt39Q6IFX4 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Krt39Q6IFX4 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Krt39Q6IFX4 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC19.63■□□□□ 0.73
Krt39Q6IFX4 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC19.63■□□□□ 0.73
Krt39Q6IFX4 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC19.63■□□□□ 0.73
Krt39Q6IFX4 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Krt39Q6IFX4 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Krt39Q6IFX4 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Krt39Q6IFX4 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Krt39Q6IFX4 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Krt39Q6IFX4 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Krt39Q6IFX4 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Krt39Q6IFX4 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms