Protein–RNA interactions for Protein: Q5R1B6

Trav8d-2, T cell receptor alpha variable 8D-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-2Q5R1B6 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav8d-2Q5R1B6 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav8d-2Q5R1B6 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav8d-2Q5R1B6 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trav8d-2Q5R1B6 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav8d-2Q5R1B6 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav8d-2Q5R1B6 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trav8d-2Q5R1B6 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trav8d-2Q5R1B6 Gm11355-201ENSMUST00000121120 306 ntBASIC17.4■□□□□ 0.38
Trav8d-2Q5R1B6 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav8d-2Q5R1B6 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav8d-2Q5R1B6 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav8d-2Q5R1B6 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Trav8d-2Q5R1B6 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav8d-2Q5R1B6 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Trav8d-2Q5R1B6 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Trav8d-2Q5R1B6 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
Trav8d-2Q5R1B6 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC17.39■□□□□ 0.37
Trav8d-2Q5R1B6 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Trav8d-2Q5R1B6 AC133598.3-202ENSMUST00000224219 531 ntBASIC17.39■□□□□ 0.37
Trav8d-2Q5R1B6 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav8d-2Q5R1B6 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC17.39■□□□□ 0.37
Trav8d-2Q5R1B6 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav8d-2Q5R1B6 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav8d-2Q5R1B6 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav8d-2Q5R1B6 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav8d-2Q5R1B6 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav8d-2Q5R1B6 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC17.38■□□□□ 0.37
Trav8d-2Q5R1B6 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Trav8d-2Q5R1B6 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Trav8d-2Q5R1B6 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
Trav8d-2Q5R1B6 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
Trav8d-2Q5R1B6 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav8d-2Q5R1B6 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
Trav8d-2Q5R1B6 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav8d-2Q5R1B6 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC17.38■□□□□ 0.37
Trav8d-2Q5R1B6 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Trav8d-2Q5R1B6 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC17.37■□□□□ 0.37
Trav8d-2Q5R1B6 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav8d-2Q5R1B6 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav8d-2Q5R1B6 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav8d-2Q5R1B6 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav8d-2Q5R1B6 Gm18958-201ENSMUST00000174258 762 ntBASIC17.37■□□□□ 0.37
Trav8d-2Q5R1B6 Gm44771-201ENSMUST00000206975 626 ntBASIC17.37■□□□□ 0.37
Trav8d-2Q5R1B6 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC17.37■□□□□ 0.37
Trav8d-2Q5R1B6 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trav8d-2Q5R1B6 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav8d-2Q5R1B6 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav8d-2Q5R1B6 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav8d-2Q5R1B6 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Trav8d-2Q5R1B6 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav8d-2Q5R1B6 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC17.36■□□□□ 0.37
Trav8d-2Q5R1B6 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Trav8d-2Q5R1B6 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
Trav8d-2Q5R1B6 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC17.36■□□□□ 0.37
Trav8d-2Q5R1B6 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Trav8d-2Q5R1B6 Gm9731-201ENSMUST00000209480 747 ntBASIC17.36■□□□□ 0.37
Trav8d-2Q5R1B6 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav8d-2Q5R1B6 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Trav8d-2Q5R1B6 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Trav8d-2Q5R1B6 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav8d-2Q5R1B6 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trav8d-2Q5R1B6 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav8d-2Q5R1B6 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Trav8d-2Q5R1B6 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav8d-2Q5R1B6 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trav8d-2Q5R1B6 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav8d-2Q5R1B6 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav8d-2Q5R1B6 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC17.35■□□□□ 0.37
Trav8d-2Q5R1B6 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Trav8d-2Q5R1B6 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Trav8d-2Q5R1B6 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trav8d-2Q5R1B6 Gm37025-201ENSMUST00000195159 829 ntBASIC17.35■□□□□ 0.37
Trav8d-2Q5R1B6 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav8d-2Q5R1B6 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav8d-2Q5R1B6 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav8d-2Q5R1B6 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trav8d-2Q5R1B6 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav8d-2Q5R1B6 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trav8d-2Q5R1B6 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Trav8d-2Q5R1B6 Gm11950-201ENSMUST00000121615 838 ntBASIC17.34■□□□□ 0.37
Trav8d-2Q5R1B6 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Trav8d-2Q5R1B6 Il3ra-202ENSMUST00000223589 738 ntBASIC17.34■□□□□ 0.37
Trav8d-2Q5R1B6 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav8d-2Q5R1B6 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav8d-2Q5R1B6 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav8d-2Q5R1B6 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav8d-2Q5R1B6 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Trav8d-2Q5R1B6 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav8d-2Q5R1B6 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav8d-2Q5R1B6 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav8d-2Q5R1B6 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav8d-2Q5R1B6 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav8d-2Q5R1B6 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav8d-2Q5R1B6 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Trav8d-2Q5R1B6 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Trav8d-2Q5R1B6 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC17.33■□□□□ 0.37
Trav8d-2Q5R1B6 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav8d-2Q5R1B6 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Trav8d-2Q5R1B6 Gm45906-201ENSMUST00000208911 1430 ntBASIC17.33■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms