Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cdx1P18111 Gm37166-201ENSMUST00000195473 2474 ntBASIC14.38□□□□□ -0.11
Cdx1P18111 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Cdx1P18111 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cdx1P18111 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cdx1P18111 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cdx1P18111 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Cdx1P18111 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cdx1P18111 Gm7856-201ENSMUST00000117514 1493 ntBASIC14.38□□□□□ -0.11
Cdx1P18111 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Cdx1P18111 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cdx1P18111 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cdx1P18111 AC165080.2-201ENSMUST00000217491 1530 ntBASIC14.37□□□□□ -0.11
Cdx1P18111 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cdx1P18111 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cdx1P18111 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC14.37□□□□□ -0.11
Cdx1P18111 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Cdx1P18111 Gm18671-201ENSMUST00000214826 683 ntBASIC14.37□□□□□ -0.11
Cdx1P18111 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Cdx1P18111 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cdx1P18111 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cdx1P18111 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cdx1P18111 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cdx1P18111 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Cdx1P18111 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Cdx1P18111 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC14.36□□□□□ -0.11
Cdx1P18111 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Cdx1P18111 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Gm11421-201ENSMUST00000122124 294 ntBASIC14.36□□□□□ -0.11
Cdx1P18111 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC14.36□□□□□ -0.11
Cdx1P18111 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
Cdx1P18111 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
Cdx1P18111 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx1P18111 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx1P18111 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx1P18111 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Cdx1P18111 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Cdx1P18111 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Cdx1P18111 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Cdx1P18111 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
Cdx1P18111 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC14.35□□□□□ -0.11
Cdx1P18111 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx1P18111 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx1P18111 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
Cdx1P18111 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx1P18111 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx1P18111 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx1P18111 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Cdx1P18111 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx1P18111 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx1P18111 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Cdx1P18111 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx1P18111 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx1P18111 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx1P18111 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx1P18111 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx1P18111 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx1P18111 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC14.34□□□□□ -0.11
Cdx1P18111 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx1P18111 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC14.34□□□□□ -0.11
Cdx1P18111 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx1P18111 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx1P18111 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx1P18111 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx1P18111 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx1P18111 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx1P18111 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx1P18111 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx1P18111 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Cdx1P18111 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cdx1P18111 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC14.33□□□□□ -0.12
Cdx1P18111 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Cdx1P18111 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cdx1P18111 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cdx1P18111 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cdx1P18111 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cdx1P18111 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC14.33□□□□□ -0.12
Cdx1P18111 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cdx1P18111 Gm37179-201ENSMUST00000194862 823 ntBASIC14.33□□□□□ -0.12
Cdx1P18111 Gm42778-201ENSMUST00000199644 553 ntBASIC14.33□□□□□ -0.12
Cdx1P18111 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms