Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
RaraP11416 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RaraP11416 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RaraP11416 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RaraP11416 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RaraP11416 Gm10849-201ENSMUST00000100397 618 ntBASIC19.27■□□□□ 0.68
RaraP11416 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC19.27■□□□□ 0.68
RaraP11416 AC140264.2-202ENSMUST00000218746 817 ntBASIC19.27■□□□□ 0.68
RaraP11416 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RaraP11416 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RaraP11416 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
RaraP11416 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RaraP11416 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
RaraP11416 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RaraP11416 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RaraP11416 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
RaraP11416 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
RaraP11416 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
RaraP11416 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RaraP11416 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RaraP11416 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RaraP11416 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RaraP11416 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RaraP11416 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RaraP11416 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RaraP11416 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC19.26■□□□□ 0.67
RaraP11416 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RaraP11416 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RaraP11416 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC19.25■□□□□ 0.67
RaraP11416 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RaraP11416 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
RaraP11416 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RaraP11416 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
RaraP11416 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC19.25■□□□□ 0.67
RaraP11416 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RaraP11416 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RaraP11416 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC19.25■□□□□ 0.67
RaraP11416 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
RaraP11416 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RaraP11416 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RaraP11416 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RaraP11416 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RaraP11416 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RaraP11416 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RaraP11416 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
RaraP11416 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RaraP11416 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RaraP11416 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC19.24■□□□□ 0.67
RaraP11416 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RaraP11416 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RaraP11416 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC19.24■□□□□ 0.67
RaraP11416 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RaraP11416 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC19.24■□□□□ 0.67
RaraP11416 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RaraP11416 Gm15039-201ENSMUST00000118914 875 ntBASIC19.24■□□□□ 0.67
RaraP11416 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC19.24■□□□□ 0.67
RaraP11416 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
RaraP11416 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC19.24■□□□□ 0.67
RaraP11416 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RaraP11416 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC19.24■□□□□ 0.67
RaraP11416 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
RaraP11416 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RaraP11416 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RaraP11416 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RaraP11416 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RaraP11416 Gm18284-201ENSMUST00000172604 624 ntBASIC19.23■□□□□ 0.67
RaraP11416 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RaraP11416 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RaraP11416 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RaraP11416 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
RaraP11416 Gm37519-201ENSMUST00000191687 2210 ntBASIC19.23■□□□□ 0.67
RaraP11416 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RaraP11416 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RaraP11416 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
RaraP11416 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RaraP11416 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RaraP11416 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RaraP11416 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
RaraP11416 Gm42555-201ENSMUST00000199304 1039 ntBASIC19.22■□□□□ 0.67
RaraP11416 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RaraP11416 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
RaraP11416 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RaraP11416 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
RaraP11416 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RaraP11416 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RaraP11416 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RaraP11416 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RaraP11416 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RaraP11416 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RaraP11416 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RaraP11416 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RaraP11416 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
RaraP11416 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RaraP11416 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
RaraP11416 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
RaraP11416 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RaraP11416 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
RaraP11416 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RaraP11416 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC19.21■□□□□ 0.67
RaraP11416 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 72.9 ms