Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC19.9■□□□□ 0.78
Pcdha4O88689 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC19.9■□□□□ 0.78
Pcdha4O88689 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdha4O88689 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdha4O88689 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdha4O88689 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Pcdha4O88689 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdha4O88689 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdha4O88689 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC19.9■□□□□ 0.78
Pcdha4O88689 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdha4O88689 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdha4O88689 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdha4O88689 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdha4O88689 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdha4O88689 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdha4O88689 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdha4O88689 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdha4O88689 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Pcdha4O88689 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdha4O88689 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Pcdha4O88689 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.78
Pcdha4O88689 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Pcdha4O88689 Gm12382-201ENSMUST00000122005 922 ntBASIC19.89■□□□□ 0.77
Pcdha4O88689 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC19.89■□□□□ 0.77
Pcdha4O88689 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Pcdha4O88689 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC19.89■□□□□ 0.77
Pcdha4O88689 AC153881.1-201ENSMUST00000214448 284 ntBASIC19.89■□□□□ 0.77
Pcdha4O88689 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Pcdha4O88689 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Pcdha4O88689 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC19.89■□□□□ 0.77
Pcdha4O88689 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Pcdha4O88689 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Pcdha4O88689 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC19.89■□□□□ 0.77
Pcdha4O88689 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Pcdha4O88689 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Pcdha4O88689 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdha4O88689 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC19.88■□□□□ 0.77
Pcdha4O88689 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdha4O88689 Gm37820-201ENSMUST00000194021 2147 ntBASIC19.88■□□□□ 0.77
Pcdha4O88689 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdha4O88689 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdha4O88689 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdha4O88689 AC124581.1-201ENSMUST00000225416 1399 ntBASIC19.88■□□□□ 0.77
Pcdha4O88689 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdha4O88689 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdha4O88689 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC19.88■□□□□ 0.77
Pcdha4O88689 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC19.88■□□□□ 0.77
Pcdha4O88689 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC19.88■□□□□ 0.77
Pcdha4O88689 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdha4O88689 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdha4O88689 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdha4O88689 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdha4O88689 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdha4O88689 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdha4O88689 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdha4O88689 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Pcdha4O88689 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdha4O88689 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcdha4O88689 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Pcdha4O88689 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcdha4O88689 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcdha4O88689 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcdha4O88689 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcdha4O88689 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcdha4O88689 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Pcdha4O88689 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcdha4O88689 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
Pcdha4O88689 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcdha4O88689 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcdha4O88689 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC19.87■□□□□ 0.77
Pcdha4O88689 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC19.87■□□□□ 0.77
Pcdha4O88689 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC19.87■□□□□ 0.77
Pcdha4O88689 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Pcdha4O88689 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Pcdha4O88689 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcdha4O88689 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC19.87■□□□□ 0.77
Pcdha4O88689 CT010444.2-201ENSMUST00000217877 1629 ntBASIC19.87■□□□□ 0.77
Pcdha4O88689 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Pcdha4O88689 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Pcdha4O88689 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Pcdha4O88689 Idnk-204ENSMUST00000226010 1898 ntBASIC19.86■□□□□ 0.77
Pcdha4O88689 Gm5828-201ENSMUST00000071842 1860 ntBASIC19.86■□□□□ 0.77
Pcdha4O88689 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Pcdha4O88689 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Pcdha4O88689 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC19.86■□□□□ 0.77
Pcdha4O88689 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC19.86■□□□□ 0.77
Pcdha4O88689 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Pcdha4O88689 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Pcdha4O88689 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Pcdha4O88689 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Pcdha4O88689 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Pcdha4O88689 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Pcdha4O88689 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Pcdha4O88689 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC19.86■□□□□ 0.77
Pcdha4O88689 Fam105a-203ENSMUST00000226170 3043 ntBASIC19.86■□□□□ 0.77
Pcdha4O88689 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Pcdha4O88689 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Pcdha4O88689 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Pcdha4O88689 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Pcdha4O88689 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms