Protein–RNA interactions for Protein: A0A075B5Z7

Trav5-1, T cell receptor alpha variable 5-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5-1A0A075B5Z7 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
Trav5-1A0A075B5Z7 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Trav5-1A0A075B5Z7 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Trav5-1A0A075B5Z7 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Trav5-1A0A075B5Z7 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 AC175538.1-201ENSMUST00000225343 1269 ntBASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Gm38342-201ENSMUST00000195710 2980 ntBASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Trav5-1A0A075B5Z7 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav5-1A0A075B5Z7 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav5-1A0A075B5Z7 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trav5-1A0A075B5Z7 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav5-1A0A075B5Z7 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav5-1A0A075B5Z7 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC15.3■□□□□ 0.04
Trav5-1A0A075B5Z7 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav5-1A0A075B5Z7 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC15.3■□□□□ 0.04
Trav5-1A0A075B5Z7 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Trav5-1A0A075B5Z7 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav5-1A0A075B5Z7 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Trav5-1A0A075B5Z7 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav5-1A0A075B5Z7 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav5-1A0A075B5Z7 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trav5-1A0A075B5Z7 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav5-1A0A075B5Z7 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC15.3■□□□□ 0.04
Trav5-1A0A075B5Z7 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav5-1A0A075B5Z7 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav5-1A0A075B5Z7 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav5-1A0A075B5Z7 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trav5-1A0A075B5Z7 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
Trav5-1A0A075B5Z7 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav5-1A0A075B5Z7 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav5-1A0A075B5Z7 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trav5-1A0A075B5Z7 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav5-1A0A075B5Z7 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav5-1A0A075B5Z7 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav5-1A0A075B5Z7 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trav5-1A0A075B5Z7 Gm29791-202ENSMUST00000207888 369 ntBASIC15.29■□□□□ 0.04
Trav5-1A0A075B5Z7 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Trav5-1A0A075B5Z7 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Trav5-1A0A075B5Z7 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav5-1A0A075B5Z7 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav5-1A0A075B5Z7 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trav5-1A0A075B5Z7 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Trav5-1A0A075B5Z7 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trav5-1A0A075B5Z7 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav5-1A0A075B5Z7 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trav5-1A0A075B5Z7 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav5-1A0A075B5Z7 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav5-1A0A075B5Z7 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trav5-1A0A075B5Z7 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav5-1A0A075B5Z7 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trav5-1A0A075B5Z7 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trav5-1A0A075B5Z7 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav5-1A0A075B5Z7 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC15.28■□□□□ 0.04
Trav5-1A0A075B5Z7 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms